RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FAM133BQ5BKY9 247 aaKnown RBP16.46■□□□□ 0.23
CLN3-201ENST00000333496 NUGGCQ68CJ6 796 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 HEATR6Q6AI08 1181 aaKnown RBP16.46■□□□□ 0.23
CLN3-201ENST00000333496 NADSYN1Q6IA69 706 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 SLC26A9Q7LBE3 791 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 UNC45BQ8IWX7 931 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 CCDC33Q8N5R6 958 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 SUMF1Q8NBK3 374 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 CCDC26Q8TAB7 109 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 CPA5Q8WXQ8 436 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 ACDQ96AP0 544 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 SEMA4AQ9H3S1 761 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 MMP17Q9ULZ9 603 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 SLC8A2Q9UPR5 921 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 ZFHX2Q9C0A1 2572 aaPredicted RBP16.46■□□□□ 0.23
CLN3-201ENST00000333496 PIEZO1Q92508 2521 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 GOLGA6L7A0A1B0GV03 622 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 ACSL4O60488 711 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 GFRA3O60609 400 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 TSPAN3O60637 253 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 LSM8O95777 96 aaKnown RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 CYP1A1P04798 512 aaPredicted RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 HNRNPLP14866 589 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLN3-201ENST00000333496 HOXD9P28356 352 aaPredicted RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 SGSHP51688 502 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 PREPLQ4J6C6 727 aaPredicted RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 C10orf76Q5T2E6 689 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 ERICH1Q86X53 443 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 XYLT1Q86Y38 959 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 ALLCQ8N6M5 410 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 TXNDC5Q8NBS9 432 aaKnown RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 ZNF397Q8NF99 534 aaPredicted RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 IPO4Q8TEX9 1081 aaKnown RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 DDI1Q8WTU0 396 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 AZIN2Q96A70 460 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 C18orf8Q96DM3 657 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 HHIPQ96QV1 700 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 ADAM33Q9BZ11 813 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 SYNCQ9H7C4 482 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 STARD13Q9Y3M8 1113 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 SGK1O00141 431 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 ADAM23O75077 832 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 LMNAP02545 664 aaKnown RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 CYBBP04839 570 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 SNX16P57768 344 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 NR1I3Q14994 352 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 MPPE1Q53F39 396 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 NAA35Q5VZE5 725 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 RFWD3Q6PCD5 774 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 TMEM92Q6UXU6 159 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 LONP2Q86WA8 852 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 ZDHHC17Q8IUH5 632 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 CAMKK1Q8N5S9 505 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 BAP1Q92560 729 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 MYEOVQ96EZ4 313 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 PCDHB18PQ96TA0 734 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 TSPY26PQ9H489 355 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 CALCOCO1Q9P1Z2 691 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 XPO7Q9UIA9 1087 aaKnown RBP16.45■□□□□ 0.22
CLN3-201ENST00000333496 SLC27A6Q9Y2P4 619 aa16.45■□□□□ 0.22
CLN3-201ENST00000333496 RALGAPA1Q6GYQ0 2036 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 HRO43593 1189 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 DAB1O75553 588 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 KLF8O95600 359 aaPredicted RBP16.44■□□□□ 0.22
CLN3-201ENST00000333496 SLC11A2P49281 568 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 ARID5AQ03989 594 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 SRSF5Q13243 272 aaKnown RBP16.44■□□□□ 0.22
CLN3-201ENST00000333496 CRY1Q16526 586 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 GEN1Q17RS7 908 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 FILIP1LQ4L180 1135 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 ZC3H12AQ5D1E8 599 aaKnown RBP16.44■□□□□ 0.22
CLN3-201ENST00000333496 PIK3R6Q5UE93 754 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 EGFLAMQ63HQ2 1017 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 NUDT18Q6ZVK8 323 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 CACNA2D4Q7Z3S7 1137 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 WDR5BQ86VZ2 330 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 ZNF513Q8N8E2 541 aaPredicted RBP16.44■□□□□ 0.22
CLN3-201ENST00000333496 TRIM44Q96DX7 344 aaPredicted RBP16.44■□□□□ 0.22
CLN3-201ENST00000333496 TMA16Q96EY4 203 aaKnown RBP16.44■□□□□ 0.22
CLN3-201ENST00000333496 EPC1Q9H2F5 836 aa16.44■□□□□ 0.22
CLN3-201ENST00000333496 CCDC163A0A0D9SF12 145 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 A0A1W2PQC6 194 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 CAVIN2O95810 425 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 UNGP13051 313 aaPredicted RBP16.43■□□□□ 0.22
CLN3-201ENST00000333496 NOS2P35228 1153 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 HSF5Q4G112 596 aaPredicted RBP16.43■□□□□ 0.22
CLN3-201ENST00000333496 OTUD1Q5VV17 481 aaPredicted RBP16.43■□□□□ 0.22
CLN3-201ENST00000333496 RNF43Q68DV7 783 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 SLC30A5Q8TAD4 765 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 KCNV2Q8TDN2 545 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 ACOX2Q99424 681 aa16.43■□□□□ 0.22
CLN3-201ENST00000333496 NUCKS1Q9H1E3 243 aaKnown RBP16.43■□□□□ 0.22
CLN3-201ENST00000333496 FAM186AA6NE01 2351 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 MOCS2O96007 188 aaPredicted RBP16.42■□□□□ 0.22
CLN3-201ENST00000333496 SERPINC1P01008 464 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 TFE3P19532 575 aaPredicted RBP16.42■□□□□ 0.22
CLN3-201ENST00000333496 SCNN1AP37088 669 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 MATKP42679 507 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 RNASE9P60153 205 aaKnown RBP16.42■□□□□ 0.22
CLN3-201ENST00000333496 CDK17Q00537 523 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms