RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LRRC40Q9H9A6 602 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 GALNT8Q9NY28 637 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 R3HDM2Q9Y2K5 976 aaKnown RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 ATRNO75882 1429 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 C17orf102A2RUQ5 167 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 SOAT2O75908 522 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 LDLRP01130 860 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 VAV1P15498 845 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 RAD51Q06609 339 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 BLMHQ13867 455 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 COL9A3Q14050 684 aaPredicted RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 SLC5A9Q2M3M2 681 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 KCNT1Q5JUK3 1230 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 N4BP2L1Q5TBK1 243 aaPredicted RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 PRMT9Q6P2P2 845 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 LRP10Q7Z4F1 713 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 PLEKHH3Q7Z736 793 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 CCDC33Q8N5R6 958 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 VPS33AQ96AX1 596 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 CISHQ9NSE2 258 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 SH3GLB1Q9Y371 365 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 SHOX2O60902 331 aaPredicted RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 ETS2P15036 469 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 SERPINH1P50454 418 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 MYL6P60660 151 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 NR1D2Q14995 579 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 TTC23LQ6PF05 361 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 DNAAF5Q86Y56 855 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 UNC45BQ8IWX7 931 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 CERS5Q8N5B7 392 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 IPMKQ8NFU5 416 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 SH3TC2Q8TF17 1288 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.79□□□□□ -0.52
VPS39-201ENST00000318006 KLK14Q9P0G3 267 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 VTI1BQ9UEU0 232 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 RSL24D1Q9UHA3 163 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 PCDHA3Q9Y5H8 950 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 DLG5Q8TDM6 1919 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 PEX1O43933 1283 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 LSM8O95777 96 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 NCAM1P13591 858 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 ALOX12P18054 663 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 MRPS22P82650 360 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 POU4F1Q01851 419 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 ORC1Q13415 861 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 AARS2Q5JTZ9 985 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 SPANXN2Q5MJ10 180 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 GIPC3Q8TF64 312 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 MMTAG2Q9BU76 263 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 KCNMB3Q9NPA1 279 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 INTS13Q9NVM9 706 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 NMRK1Q9NWW6 199 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 IMPDH2P12268 514 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 ELK3P41970 407 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 LAMTOR4Q0VGL1 99 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 CLEC16AQ2KHT3 1053 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 C9orf131Q5VYM1 1079 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 SNX32Q86XE0 403 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 IQCKQ8N0W5 287 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 PABPC5Q96DU9 382 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 FANCEQ9HB96 536 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 CACNA2D2Q9NY47 1150 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 KLHL3Q9UH77 587 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 PKP3Q9Y446 797 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 H0YC42 278 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 CDH3P22223 829 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 JAK1P23458 1154 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 RPA3P35244 121 aaPredicted RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 BFSP2Q13515 415 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 PDK2Q15119 407 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 CCDC153Q494R4 210 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 ACOT1Q86TX2 421 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 RNF148Q8N7C7 305 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 ACTL9Q8TC94 416 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 SPATA17Q96L03 361 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 KCTD14Q9BQ13 255 aaPredicted RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 TMEM165Q9HC07 324 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 DKK3Q9UBP4 350 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 EIF3LQ9Y262 564 aaKnown RBP11.79□□□□□ -0.52
VPS39-201ENST00000318006 ACOT9Q9Y305 439 aa11.79□□□□□ -0.52
VPS39-201ENST00000318006 DCXO43602 365 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 VTNP04004 478 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 EIF2S1P05198 315 aaKnown RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 BMP6P22004 513 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 SSTR1P30872 391 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 GLRBP48167 497 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 XIAPP98170 497 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 TRAF3Q13114 568 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 SNX17Q15036 470 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 OTUD3Q5T2D3 398 aaPredicted RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 ISLR2Q6UXK2 745 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 RIPOR1Q6ZS17 1223 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 DENND5BQ6ZUT9 1274 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 STRA8Q7Z7C7 330 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 ZCCHC9Q8N567 271 aaKnown RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 C19orf60Q96EN9 201 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 APOL4Q9BPW4 351 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 KCTD10Q9H3F6 313 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 CATSPERBQ9H7T0 1116 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms