RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PCDH18Q9HCL0 1135 aa13.87□□□□□ -0.19
SKA3-202ENST00000314759 TMCO1Q9UM00 188 aa13.87□□□□□ -0.19
SKA3-202ENST00000314759 PCDHA11Q9Y5I1 949 aa13.87□□□□□ -0.19
SKA3-202ENST00000314759 RLFQ13129 1914 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 FARP2O94887 1054 aaPredicted RBP13.86□□□□□ -0.19
SKA3-202ENST00000314759 ALDOAP04075 364 aaKnown RBP13.86□□□□□ -0.19
SKA3-202ENST00000314759 HMGCS2P54868 508 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 GRM2Q14416 872 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 N4BP2L1Q5TBK1 243 aaPredicted RBP13.86□□□□□ -0.19
SKA3-202ENST00000314759 EEF1DP3Q658K8 133 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 LCA5Q86VQ0 697 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 GDPD5Q8WTR4 605 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 CDH22Q9UJ99 828 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 AFG3L2Q9Y4W6 797 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 TXNDC9O14530 226 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 NFICP08651 508 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 CYP3A5P20815 502 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 ARRB2P32121 409 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 IDH3AP50213 366 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 BTKQ06187 659 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 MAP1SQ66K74 1059 aaPredicted RBP13.86□□□□□ -0.19
SKA3-202ENST00000314759 TSHZ1Q6ZSZ6 1077 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 RSPH3Q86UC2 560 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 NME8Q8N427 588 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 CCDC33Q8N5R6 958 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 KLHL4Q9C0H6 718 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 CYP4F11Q9HBI6 524 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 NGRNQ9NPE2 291 aaKnown RBP13.86□□□□□ -0.19
SKA3-202ENST00000314759 PNPOQ9NVS9 261 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 PCDHGB4Q9UN71 923 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 PCDHGB5Q9Y5G0 923 aa13.86□□□□□ -0.19
SKA3-202ENST00000314759 MGAMO43451 1857 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 ITGA2BP08514 1039 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 FAM200BP0CF97 657 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 CXCL9Q07325 125 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 PDE1CQ14123 709 aaPredicted RBP13.85□□□□□ -0.19
SKA3-202ENST00000314759 PDK3Q15120 406 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 MMEL1Q495T6 779 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 BOLA3Q53S33 107 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 STXBP5Q5T5C0 1151 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 ATF7IP2Q5U623 682 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 IER5Q5VY09 327 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 NCAPG2Q86XI2 1143 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 ZBTB8OSQ8IWT0 167 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 RTKN2Q8IZC4 609 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 ACTRT2Q8TDY3 377 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 JDP2Q8WYK2 163 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 SORT1Q99523 831 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 STN1Q9H668 368 aaKnown RBP13.85□□□□□ -0.19
SKA3-202ENST00000314759 RHBDL2Q9NX52 303 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 ITGA11Q9UKX5 1188 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 PLIN3O60664 434 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 APBA3O96018 575 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 ITGB3P05106 788 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 GJB1P08034 283 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 PIM1P11309 404 aaPredicted RBP13.85□□□□□ -0.19
SKA3-202ENST00000314759 SLC10A2Q12908 348 aaPredicted RBP13.85□□□□□ -0.19
SKA3-202ENST00000314759 PEX6Q13608 980 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 PCLAFQ15004 111 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 DBN1Q16643 649 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 PPP6R3Q5H9R7 873 aaPredicted RBP13.85□□□□□ -0.19
SKA3-202ENST00000314759 VWA5B1Q5TIE3 1220 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 SMYD5Q6GMV2 418 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 SNRNP25Q9BV90 132 aaKnown RBP13.85□□□□□ -0.19
SKA3-202ENST00000314759 BTBD7Q9P203 1132 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 POMPQ9Y244 141 aa13.85□□□□□ -0.19
SKA3-202ENST00000314759 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 LOC100653049A0A140TA62 436 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 TPP1O14773 563 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 VILLO15195 856 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 GCATO75600 419 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 KRT34O76011 436 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 PRKCGP05129 697 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 VDRP11473 427 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 TCF7P36402 384 aaPredicted RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 GBE1Q04446 702 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 R3HDM1Q15032 1099 aaKnown RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 UGT2A3Q6UWM9 527 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 HPS6Q86YV9 775 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 C10orf107Q8IVU9 208 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 ZNF280CQ8ND82 737 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 CXorf38Q8TB03 319 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 WDR27A2RRH5 827 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 ZNF195O14628 629 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 SMIM18P0DKX4 95 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 TPSB2P20231 275 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 CNTFP26441 200 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 CRADDP78560 199 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 MXD4Q14582 209 aaPredicted RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 TPSAB1Q15661 275 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 TCHHL1Q5QJ38 904 aaPredicted RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 OLFML2BQ68BL8 750 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 DEFB107AQ8IZN7 70 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.84□□□□□ -0.19
SKA3-202ENST00000314759 TFB1MQ8WVM0 346 aaKnown RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 LENG1Q96BZ8 264 aaPredicted RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 MIS12Q9H081 205 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 NRDE2Q9H7Z3 1164 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 RPF1Q9H9Y2 349 aaKnown RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 DDX18Q9NVP1 670 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms