RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CCNYL2Q5T2Q4 361 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 FRMD7Q6ZUT3 714 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 HIPK1Q86Z02 1210 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 WDR49Q8IV35 697 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 MYO1HQ8N1T3 1032 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SMYD1Q8NB12 490 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 OR8K3Q8NH51 312 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 FIG4Q92562 907 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 DCLRE1BQ9H816 532 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 NDUFA13Q9P0J0 144 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PCDHGA10Q9Y5H3 936 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 LYVE1Q9Y5Y7 322 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ATP8B3O60423 1300 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SYNGAP1Q96PV0 1343 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 NLRP1Q9C000 1473 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 TCP11X1B4DZS4 312 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SNAP23O00161 211 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 MEN1O00255 615 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 NUDT14O95848 222 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ANXA5P08758 320 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 GSTM5P46439 218 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 KCNK10P57789 538 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 KRT24Q2M2I5 525 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PGS1Q32NB8 556 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM26FQ5R3K3 315 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CYP4Z1Q86W10 505 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CNTD1Q8N815 330 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 UPF1Q92900 1129 aaKnown RBP eCLIP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF274Q96GC6 653 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 NRBP2Q9NSY0 501 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC39A1Q9NY26 324 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 AP3M1Q9Y2T2 418 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 A0A0U1RQK1 487 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 BMP10O95393 424 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 TFRCP02786 760 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 POU2F2P09086 479 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 SBK2P0C263 348 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 G0S2P27469 103 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CYP4F8P98187 520 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 GRHL2Q6ISB3 625 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC25A25Q6KCM7 469 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 NLRP8Q86W28 1048 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 MRPL9Q9BYD2 267 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 COPRSQ9NQ92 184 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 GRHL1Q9NZI5 618 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 PSMD9O00233 223 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 DPYSL4O14531 572 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 INPPL1O15357 1258 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 SGTAO43765 313 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CNPP09543 421 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 WEE2P0C1S8 567 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 VARSP26640 1264 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CNTN1Q12860 1018 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 HERC3Q15034 1050 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 ADRM1Q16186 407 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 SMARCD2Q92925 531 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CMTM5Q96DZ9 223 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 ARL5BQ96KC2 179 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 KCNH3Q9ULD8 1083 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 RIMKLBQ9ULI2 386 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 BCORL1Q5H9F3 1711 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 GSAPA4D1B5 854 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 AKAP8O43823 692 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 OR5F1O95221 314 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CEBPBP17676 345 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 GRIA1P42261 906 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 LIG4P49917 911 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 PHC1P78364 1004 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CYP24A1Q07973 514 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 KLHL38Q2WGJ6 581 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM20CQ8IXL6 584 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 OXR1Q8N573 874 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 DEPTORQ8TB45 409 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 RORBQ92753 470 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 PARD6BQ9BYG5 372 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 TRIM9Q9C026 710 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 MED28Q9H204 178 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CDYLQ9Y232 598 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 PCDHA13Q9Y5I0 950 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 BCLAF3A2AJT9 711 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CPSF4O95639 269 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 STAU1O95793 577 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CHRNGP07510 517 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 CHRM1P11229 460 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 PLA2G4AP47712 749 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 RESTQ13127 1097 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 C9orf131Q5VYM1 1079 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 MARVELD2Q8N4S9 558 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 OR2L8Q8NGY9 312 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 TMCO6Q96DC7 493 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 PPM1MQ96MI6 270 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 LINC00597Q9H2U6 94 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 NEK6Q9HC98 313 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 SMURF1Q9HCE7 757 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 GCC2Q8IWJ2 1684 aa7.81□□□□□ -1.16
LIMCH1-201ENST00000313860 MTHFD2P13995 350 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 TRMT5Q32P41 509 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM131AQ6UXB0 335 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM228AQ86W67 206 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 C10orf107Q8IVU9 208 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms