RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ACSF2Q96CM8 615 aaPredicted RBP14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF518BQ9C0D4 1074 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 CDK7P50613 346 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 RPL10AP62906 217 aaKnown RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 CSHL1Q14406 222 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 ZKSCAN4Q969J2 545 aaPredicted RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 PPP1R14BQ96C90 147 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TEKT5Q96M29 485 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TMEM121Q9BTD3 319 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 WDR12Q9GZL7 423 aaKnown RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 REEP1Q9H902 201 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 PBRM1Q86U86 1689 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TXNP10599 105 aaKnown RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 ETS1P14921 441 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 RAB25P57735 213 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 GMFBP60983 142 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TAF5Q15542 800 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TDRD10Q5VZ19 366 aaKnown RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 ABRAXAS1Q6UWZ7 409 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 PGBD3Q8N328 593 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 ACTR8Q9H981 624 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TMEM138Q9NPI0 162 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 DDIT4Q9NX09 232 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 USP6P35125 1406 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 A0A087X0T9 212 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 CES2O00748 559 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 ADCY6O43306 1168 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 DDHD2O94830 711 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 FAM228BP0C875 321 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 GARTP22102 1010 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 CDK16Q00536 496 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 FGD3Q5JSP0 725 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 C2orf69Q8N8R5 385 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TDRD3Q9H7E2 651 aaKnown RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 PCDH9Q9HC56 1237 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 CMTM6Q9NX76 183 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 STOML2Q9UJZ1 356 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 H3BQF6 201 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 NDUFB5O43674 189 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 PRKAR1AP10644 381 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 HPCAL1P37235 193 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 GSSP48637 474 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 NR1H2P55055 460 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 N4BP2L1Q5TBK1 243 aaPredicted RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 CRELD2Q6UXH1 353 aaPredicted RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 FAM126BQ8IXS8 530 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TTLL6Q8N841 843 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 PROX1Q92786 737 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 Q96MT0 163 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 HOXD10P28358 340 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 ABATP80404 500 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 DGCR6Q14129 220 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 VPS72Q15906 364 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 SPDYCQ5MJ68 293 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 KBTBD2Q8IY47 623 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 POC5Q8NA72 575 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 NUDT5Q9UKK9 219 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 MAPRE3Q9UPY8 281 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 RPA1P27694 616 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 CCDC157Q569K6 752 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 AKAP14Q86UN6 197 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 TMC2Q8TDI7 906 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 MYDGFQ969H8 173 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 CPNE1Q99829 537 aa14.19□□□□□ -0.14
CSPG4-201ENST00000308508 A1CFQ9NQ94 594 aaKnown RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF608Q9ULD9 1512 aaPredicted RBP14.19□□□□□ -0.14
CSPG4-201ENST00000308508 SNAP91O60641 907 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 F9P00740 461 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ITGA4P13612 1032 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 PYDC2Q56P42 97 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 NOTUMQ6P988 496 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 BHLHE22Q8NFJ8 381 aaPredicted RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 SLC25A23Q9BV35 468 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 KIAA1257Q9ULG3 409 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 TBX20Q9UMR3 447 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ECE2O60344 883 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ITGALP20701 1170 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 MGAT5BQ3V5L5 792 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ACOX2Q99424 681 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 GORASP1Q9BQQ3 440 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 KCNK4Q9NYG8 393 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 CDH9Q9ULB4 789 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 HAT1O14929 419 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ZC3H11AO75152 810 aaKnown RBP eCLIP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ODC1P11926 461 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ELF3P78545 371 aaPredicted RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 TRAP1Q12931 704 aaKnown RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 PROSER1Q86XN7 944 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 CDRT15Q96T59 188 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 EPB41L1Q9H4G0 881 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ABCB10Q9NRK6 738 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 AFF2P51816 1311 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 HALP42357 657 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF846Q147U1 533 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 NRF1Q16656 503 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 CBWD2Q8IUF1 395 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 FUKQ8N0W3 1084 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 TCP10LQ8TDR4 215 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 TBC1D13Q9NVG8 400 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 PRKAG3Q9UGI9 489 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms