RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NCF2P19878 526 aaPredicted RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 RFX1P22670 979 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 TBXAS1P24557 533 aaPredicted RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 YWHAGP61981 247 aaKnown RBP eCLIP11.25□□□□□ -0.61
LSM3-201ENST00000306024 RBP5P82980 135 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 SPOPLQ6IQ16 392 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 TAS1R3Q7RTX0 852 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 TTC7BQ86TV6 843 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 DDI1Q8WTU0 396 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 NDEL1Q9GZM8 345 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 PAIP1Q9H074 479 aaKnown RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 SAGE1Q9NXZ1 904 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 SELENONQ9NZV5 590 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 RLFQ13129 1914 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 ZBTB42B2RXF5 422 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 KDM1AO60341 852 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 CYP1A1P04798 512 aaPredicted RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 BGNP21810 368 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 POLR2BP30876 1174 aaKnown RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 CD52P31358 61 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 GTF2H1P32780 548 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 ATP1A4Q13733 1029 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 OASLQ15646 514 aaKnown RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 ANKRD20A4Q4UJ75 823 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 ATG16L1Q676U5 607 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 RAPH1Q70E73 1250 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 LPCAT2Q7L5N7 544 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 WDR49Q8IV35 697 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 GSTCDQ8NEC7 633 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 SLC20A1Q8WUM9 679 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 ZFRQ96KR1 1074 aaKnown RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 HAPLN3Q96S86 360 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 PPM1HQ9ULR3 514 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 LOC285556D6RIA3 1793 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 TTLL13PA6NNM8 815 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 TSPAN1O60635 241 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 TRMUO75648 421 aaKnown RBP11.24□□□□□ -0.61
LSM3-201ENST00000306024 RECQL4O94761 1208 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 CCL5P13501 91 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 AXLP30530 894 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 ARL4CP56559 192 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 ENOSF1Q7L5Y1 443 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 RBM15BQ8NDT2 890 aaKnown RBP11.24□□□□□ -0.61
LSM3-201ENST00000306024 OR5B17Q8NGF7 314 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 OR6B3Q8NGW1 331 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 DCUN1D5Q9BTE7 237 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 TAGLN3Q9UI15 199 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 SNX9Q9Y5X1 595 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 EVPLQ92817 2033 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 A0A1W2PPM1 405 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 FOXN3O00409 490 aaPredicted RBP11.24□□□□□ -0.61
LSM3-201ENST00000306024 TRAFD1O14545 582 aaPredicted RBP11.24□□□□□ -0.61
LSM3-201ENST00000306024 PIAS1O75925 651 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 WEE2P0C1S8 567 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 OCM2P0CE71 109 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 OCMP0CE72 109 aaPredicted RBP11.24□□□□□ -0.61
LSM3-201ENST00000306024 SRGAP2BP0DMP2 458 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 AQP4P55087 323 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 MYL6P60660 151 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 FOLH1Q04609 750 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 KLHDC10Q6PID8 442 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 DDHD1Q8NEL9 900 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 IFT43Q96FT9 208 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 NMUR2Q9GZQ4 415 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 C12orf65Q9H3J6 166 aaKnown RBP11.24□□□□□ -0.61
LSM3-201ENST00000306024 CDHR5Q9HBB8 845 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 NCANO14594 1321 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 IQANK1A0A1B0GTG1 560 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 GIPC1O14908 333 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 RAG1P15918 1043 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 ARSEP51690 589 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 POU5F1BQ06416 359 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 C11orf63Q6NUN7 778 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 CTU1Q7Z7A3 348 aaKnown RBP11.24□□□□□ -0.61
LSM3-201ENST00000306024 POU5F2Q8N7G0 328 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 PGBD4Q96DM1 585 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 MFSD14AQ96MC6 490 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 ADAM2Q99965 735 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 SNX25Q9H3E2 840 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 PDZD7Q9H5P4 517 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 DPP3Q9NY33 737 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 RRN3Q9NYV6 651 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 UBAP1Q9NZ09 502 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 CNTNAP2Q9UHC6 1331 aa11.24□□□□□ -0.61
LSM3-201ENST00000306024 LOC100653049A0A140TA62 436 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 FAM237BA0A1B0GVD1 139 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 F8W8V4 182 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 KRT34O76011 436 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 TNFAIP8O95379 198 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 RRM1P23921 792 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 LBX1P52954 281 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 DMPKQ09013 629 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 JADE1Q6IE81 842 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 ALYREFQ86V81 257 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 CROCCP3Q8IVE0 287 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 ANKLE1Q8NAG6 615 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 HPDLQ96IR7 371 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 ASB7Q9H672 318 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 EURLQ9NYK6 297 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 LGALS13Q9UHV8 139 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms