RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 GSDMBQ8TAX9 411 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 MAGEC3Q8TD91 643 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 STAMBPL1Q96FJ0 436 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 TRIM55Q9BYV6 548 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 HMX2A2RU54 273 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 NPR3P17342 541 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 SESN2P58004 480 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 PRKD1Q15139 912 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 NBPF20Q3BBV1 942 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 ACCSLQ4AC99 568 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 PREPLQ4J6C6 727 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 MORN1Q5T089 497 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 LIMS2Q7Z4I7 341 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 RNF169Q8NCN4 708 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 RNF139Q8WU17 664 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 DEPDC1BQ8WUY9 529 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 SLC7A6OSQ96CW6 309 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 PRR11Q96HE9 360 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 OLFM3Q96PB7 478 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 HNRNPABQ99729 332 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 LRRC4Q9HBW1 653 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 PCMTD2Q9NV79 361 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 HEY2Q9UBP5 337 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 C17orf102A2RUQ5 167 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 TPSB2P20231 275 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 SCNN1AP37088 669 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 CRYBB1P53674 252 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 SLC8A3P57103 927 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 SEMA5AQ13591 1074 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 TPSAB1Q15661 275 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 CLEC20AQ6ZU45 233 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 LRRC39Q96DD0 335 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 PGLYRP2Q96PD5 576 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 ZNF395Q9H8N7 513 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 KCNK13Q9HB14 408 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 FBXO6Q9NRD1 293 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 PIGVQ9NUD9 493 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 IL1RAPL1Q9NZN1 696 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 ZNF180Q9UJW8 692 aa18.94■□□□□ 0.62
SHKBP1-201ENST00000291842 A0A0A0MRY4 1105 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 HAS3O00219 553 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 RNF103O00237 685 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 NRP1O14786 923 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 WARSP23381 471 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 WLSQ5T9L3 541 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 CLNKQ7Z7G1 428 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 CHSY1Q86X52 802 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 SIX6OS1Q8N1H7 587 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 P2RY11Q96G91 374 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 OXNAD1Q96HP4 312 aaPredicted RBP18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 SPATA13Q96N96 652 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 LRMDAQ9H2I8 198 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 GTF2IRD1Q9UHL9 959 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 PLLPQ9Y342 182 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 PCDHA11Q9Y5I1 949 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 BRCA2P51587 3418 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 EZRP15311 586 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 TKTL1P51854 596 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 IRX4P78413 519 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 OLIG2Q13516 323 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 LGSNQ5TDP6 509 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 C4orf22Q6V702 233 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 NDUFAF2Q8N183 169 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 C2orf69Q8N8R5 385 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 KCNK16Q96T55 309 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 TMEM120AQ9BXJ8 343 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 KRT82Q9NSB4 513 aa18.93■□□□□ 0.62
SHKBP1-201ENST00000291842 FAM159BA6NKW6 160 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 FAM72CH0Y354 149 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 DAB1O75553 588 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 ATP5HO75947 161 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 KRT38O76015 456 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 AMHP03971 560 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 EPHB2P29323 1055 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 SERPINB3P29508 390 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 MLH1P40692 756 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 CPT1AP50416 773 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 ARFIP2P53365 341 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 DEUP1Q05D60 604 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 CBLBQ13191 982 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 FAM72AQ5TYM5 149 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 CES4AQ5XG92 561 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 FAM72DQ6L9T8 149 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 FAM72BQ86X60 149 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 TOP6BLQ8N6T0 577 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 SLC7A14Q8TBB6 771 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 LPPQ93052 612 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 AP5M1Q9H0R1 490 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 XAB2Q9HCS7 855 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 DDX43Q9NXZ2 648 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 FAM237BA0A1B0GVD1 139 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 UNCXA6NJT0 531 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 MGAT1P26572 445 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 PSMB4P28070 264 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 NOS2P35228 1153 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 GPR162Q16538 588 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 GPRIN1Q7Z2K8 1008 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 LONP2Q86WA8 852 aa18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 RAB3IPQ96QF0 476 aaPredicted RBP18.92■□□□□ 0.62
SHKBP1-201ENST00000291842 NPY6RQ99463 290 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms