RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 FAF2Q96CS3 445 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 HHIPL1Q96JK4 782 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 BTBD6Q96KE9 485 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 DDX43Q9NXZ2 648 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 DNMT3LQ9UJW3 386 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 FHOD1Q9Y613 1164 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3DA0A087WVF3 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3IA0A087WXS9 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3EA0A087X179 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3KA0A087X1G2 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3FA6NER0 549 aaPredicted RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3LB9A6J9 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 M0R3G1 203 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ARIH2O95376 493 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3HP0C7X1 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 CD52P31358 61 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 GCLMP48507 274 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBX4P57082 545 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 SLC39A12Q504Y0 691 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 FASTKD1Q53R41 847 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3GQ6DHY5 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3CQ6IPX1 549 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 MCEMP1Q8IX19 187 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 SMYD4Q8IYR2 804 aaPredicted RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D3Q8IZP1 549 aaPredicted RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 PRPF18Q99633 342 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 WDCPQ9H6R7 721 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 CYP3A43Q9HB55 503 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 MRGBPQ9NV56 204 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ASB3Q9Y575 518 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 PKD1L3Q7Z443 1732 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 C16orf96A6NNT2 1141 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TCP11X1B4DZS4 312 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 C9J4A7 227 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 PEX12O00623 359 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 XPO1O14980 1071 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 PLA2G6O60733 806 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ATP1A3P13637 1013 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ATP6V1B1P15313 513 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ALOX15P16050 662 aaPredicted RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 CYP11B2P19099 503 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 RPA1P27694 616 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 PLA2G4AP47712 749 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 SERPINB8P50452 374 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 SNRPD1P62314 119 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 COASYQ13057 564 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TRIP10Q15642 601 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ADRM1Q16186 407 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 P3H1Q32P28 736 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 LBX2Q6XYB7 198 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 BRI3BPQ8WY22 251 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TRIM8Q9BZR9 551 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TRIT1Q9H3H1 467 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 AGO4Q9HCK5 861 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 PARVAQ9NVD7 372 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 CNOT8Q9UFF9 292 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 PRR5-ARHGAP8B1AHC4 643 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 COPEO14579 308 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TBC1D4O60343 1298 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ITGB3P05106 788 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 SMPD1P17405 629 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 TAS2R50P59544 299 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 DSG1Q02413 1049 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 KRR1Q13601 381 aaKnown RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 DNAL1Q4LDG9 190 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 SETMARQ53H47 684 aaPredicted RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 GLRA4Q5JXX5 417 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 ELOA2Q8IYF1 753 aaPredicted RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 WDR60Q8WVS4 1066 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 CCSER1Q9C0I3 900 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 THAP9Q9H5L6 903 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 AIPL1Q9NZN9 384 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 BARX2Q9UMQ3 279 aaPredicted RBP8.04□□□□□ -1.12
USP3-201ENST00000268049 SLC27A6Q9Y2P4 619 aa8.04□□□□□ -1.12
USP3-201ENST00000268049 KRT87PA6NCN2 255 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 PRR23D1E9PI22 279 aaPredicted RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 TMX2-CTNND1H3BSU7 103 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 SMIM22K7EJ46 135 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 SLC16A3O15427 465 aaKnown RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 AHCYL1O43865 530 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 PRR23D2P0DMB1 279 aaPredicted RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 ADARP55265 1226 aaKnown RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 PSMC6P62333 389 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 KBTBD12Q3ZCT8 623 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 OTOP1Q7RTM1 612 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 FAM98AQ8NCA5 519 aaKnown RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 NMD3Q96D46 503 aaKnown RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 PRMT1Q99873 361 aaKnown RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 RTP3Q9BQQ7 232 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 RNPEPQ9H4A4 650 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 C8orf33Q9H7E9 229 aaPredicted RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 SAMSN1Q9NSI8 373 aaKnown RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 DUS2Q9NX74 493 aaKnown RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 GMEB1Q9Y692 573 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 ESYT3A0FGR9 886 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 C5orf58C9J3I9 102 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 CCL16O15467 120 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 HSPA4LO95757 839 aa8.03□□□□□ -1.12
USP3-201ENST00000268049 PIM1P11309 404 aaPredicted RBP8.03□□□□□ -1.12
USP3-201ENST00000268049 FDPSP14324 419 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms