RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 CASP10Q92851 521 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 EGFL8Q99944 293 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 SPON2Q9BUD6 331 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 MMADHCQ9H3L0 296 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 ARHGEF3Q9NR81 526 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 DDIT4Q9NX09 232 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 APOC4-APOC2K7ER74 178 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 PMPCBO75439 489 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 DLGAP3O95886 979 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 APOC2P02655 101 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 KDELR1P24390 212 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 FOXN2P32314 431 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 DPYSL3Q14195 570 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 GSTA3Q16772 222 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 TRIM60Q495X7 471 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 C6orf89Q6UWU4 347 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 RBM15BQ8NDT2 890 aaKnown RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 DNERQ8NFT8 737 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 TUBGCP3Q96CW5 907 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 MARK4Q96L34 752 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 PTPRHQ9HD43 1115 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 NKX1-2Q9UD57 310 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 PARP4Q9UKK3 1724 aaKnown RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 A0A0B4J269 797 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 LYPLA1O75608 230 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 CTSHP09668 335 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 OCM2P0CE71 109 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 OCMP0CE72 109 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 RBL1P28749 1068 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 FDFT1P37268 417 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 RPL5P46777 297 aaKnown RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 NPNTQ6UXI9 565 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 TTC7BQ86TV6 843 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 BHLHE22Q8NFJ8 381 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS33A-201ENST00000267199 PHACTR1Q9C0D0 580 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 RNPEPQ9H4A4 650 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 MYRFQ9Y2G1 1151 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 PCDHA2Q9Y5H9 948 aa11.86□□□□□ -0.51
VPS33A-201ENST00000267199 PLIN4Q96Q06 1357 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 ACKR2O00590 384 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 AVILO75366 819 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 CYP2F1P24903 491 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 PTPN7P35236 360 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 LIN52Q52LA3 116 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 TBCELQ5QJ74 424 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 NOTUMQ6P988 496 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 UTS2BQ765I0 119 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 SCUBE3Q8IX30 993 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 ATPAF2Q8N5M1 289 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 MAML3Q96JK9 1138 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 SPATC1LQ9H0A9 340 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 ZC4H2Q9NQZ6 224 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 CAPN8A6NHC0 703 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 TRPC5OSA6NMA1 111 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 E5RI56 91 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 NR5A2O00482 541 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 MICAL2O94851 1124 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 CCNE2O96020 404 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 CCDC159P0C7I6 412 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 INSRRP14616 1297 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 TAF6P49848 677 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 LBRQ14739 615 aaKnown RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 ZDHHC24Q6UX98 284 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 ZNF398Q8TD17 642 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 HELQQ8TDG4 1101 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 ZNF317Q96PQ6 595 aaPredicted RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 SEPHS2Q99611 448 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 EXOSC4Q9NPD3 245 aaKnown RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 DMAC2Q9NW81 257 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 CCDC167Q9P0B6 97 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 SEPT3Q9UH03 358 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 UBQLN1Q9UMX0 589 aaKnown RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 USP12O75317 370 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 PARNO95453 639 aaKnown RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 TGFB3P10600 412 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 TNFSF9P41273 254 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 C21orf59P57076 290 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 FOLH1Q04609 750 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 CCDC15Q0P6D6 951 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 MPP3Q13368 585 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 KIAA1841Q6NSI8 718 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 ZNF483Q8TF39 744 aaPredicted RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 PABPC5Q96DU9 382 aaKnown RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 MFSD14AQ96MC6 490 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 NR1H4Q96RI1 486 aaPredicted RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 NAT9Q9BTE0 207 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 CADM1Q9BY67 442 aaKnown RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 BARX2Q9UMQ3 279 aaPredicted RBP11.85□□□□□ -0.51
VPS33A-201ENST00000267199 SNED1Q8TER0 1413 aa11.85□□□□□ -0.51
VPS33A-201ENST00000267199 SETD1AO15047 1707 aaKnown RBP11.84□□□□□ -0.51
VPS33A-201ENST00000267199 CLOCKO15516 846 aa11.84□□□□□ -0.51
VPS33A-201ENST00000267199 ABHD2P08910 425 aa11.84□□□□□ -0.51
VPS33A-201ENST00000267199 TPH1P17752 444 aa11.84□□□□□ -0.51
VPS33A-201ENST00000267199 ACO1P21399 889 aaKnown RBP11.84□□□□□ -0.51
VPS33A-201ENST00000267199 MGAT1P26572 445 aa11.84□□□□□ -0.51
VPS33A-201ENST00000267199 RPS6KA3P51812 740 aa11.84□□□□□ -0.51
VPS33A-201ENST00000267199 USP4Q13107 963 aa11.84□□□□□ -0.51
VPS33A-201ENST00000267199 C15orf59Q2T9L4 293 aaPredicted RBP11.84□□□□□ -0.51
VPS33A-201ENST00000267199 SV2CQ496J9 727 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms