RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 SHCBP1LQ9BZQ2 653 aa17.18■□□□□ 0.34
PHRF1-201ENST00000264555 DHX33Q9H6R0 707 aaKnown RBP17.18■□□□□ 0.34
PHRF1-201ENST00000264555 NCKIPSDQ9NZQ3 722 aa17.18■□□□□ 0.34
PHRF1-201ENST00000264555 PTPN7P35236 360 aa17.18■□□□□ 0.34
PHRF1-201ENST00000264555 KCNK10P57789 538 aa17.18■□□□□ 0.34
PHRF1-201ENST00000264555 RRAGCQ9HB90 399 aa17.18■□□□□ 0.34
PHRF1-201ENST00000264555 HES2Q9Y543 173 aa17.18■□□□□ 0.34
PHRF1-201ENST00000264555 SNX5Q9Y5X3 404 aa17.18■□□□□ 0.34
PHRF1-201ENST00000264555 CFAP99D6REC4 459 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 AKAP10O43572 662 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 SERPINE1P05121 402 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 NPR3P17342 541 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 CHKAP35790 457 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 ENPEPQ07075 957 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 PLEKHA7Q6IQ23 1121 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 NPNTQ6UXI9 565 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 TSHZ1Q6ZSZ6 1077 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 SCUBE1Q8IWY4 988 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 PPTC7Q8NI37 304 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 LENG9Q96B70 501 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 CDK5RAP1Q96SZ6 601 aaKnown RBP17.17■□□□□ 0.34
PHRF1-201ENST00000264555 SNRNP25Q9BV90 132 aaKnown RBP17.17■□□□□ 0.34
PHRF1-201ENST00000264555 THAP1Q9NVV9 213 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 CRTAMO95727 393 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 USP17L7P0C7H9 530 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 TBX4P57082 545 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 POU4F1Q01851 419 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 FLOT2Q14254 428 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 ZBTB41Q5SVQ8 909 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 KCNMB4Q86W47 210 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 NUP93Q8N1F7 819 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 LRRC52Q8N7C0 313 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 SH3KBP1Q96B97 665 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 WNK4Q96J92 1243 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 FAM84AQ96KN4 292 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 FOPNLQ96NB1 174 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 PRKD2Q9BZL6 878 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 COG5Q9UP83 839 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 SNCAIPQ9Y6H5 919 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 TUBP50607 506 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 RCN1Q15293 331 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 ZNF670Q9BS34 389 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 TSPYL2Q9H2G4 693 aaPredicted RBP17.17■□□□□ 0.34
PHRF1-201ENST00000264555 EFCAB1Q9HAE3 211 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 LRP6O75581 1613 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 COL1A2P08123 1366 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 CLASP2O75122 1294 aaKnown RBP17.17■□□□□ 0.34
PHRF1-201ENST00000264555 TCN1P20061 433 aaPredicted RBP17.17■□□□□ 0.34
PHRF1-201ENST00000264555 ZNF280AP59817 542 aaPredicted RBP17.17■□□□□ 0.34
PHRF1-201ENST00000264555 WSCD1Q658N2 575 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 DCLRE1BQ9H816 532 aa17.17■□□□□ 0.34
PHRF1-201ENST00000264555 A0A0A0MRY4 1105 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 PFDN1O60925 122 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 VPS26AO75436 327 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 IFNA8P32881 189 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 POU6F1Q14863 301 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 MOB2Q70IA6 237 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 YTHDF3Q7Z739 585 aaKnown RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 ZSWIM2Q8NEG5 633 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 C18orf25Q96B23 403 aaPredicted RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SPATA13Q96N96 652 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 GPAMQ9HCL2 828 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 CRLS1Q9UJA2 301 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 GGA2Q9UJY4 613 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 PCDHA2Q9Y5H9 948 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 RGPD2P0DJD1 1756 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SCN11AQ9UI33 1791 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 EEF1DP29692 281 aaKnown RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 MTFR1Q15390 333 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 DDX53Q86TM3 631 aaKnown RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 FHDC1Q9C0D6 1143 aaPredicted RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 TKTL2Q9H0I9 626 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SCUBE2Q9NQ36 999 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 ADGRA2Q96PE1 1338 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SKAP2O75563 359 aaPredicted RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 TPH1P17752 444 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 ADRA1DP25100 572 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 PDPK2PQ6A1A2 396 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 TSPAN18Q96SJ8 248 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SIKE1Q9BRV8 207 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 UBXN6Q9BZV1 441 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 CCDC134Q9H6E4 229 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 ERVK-5Q9HDB9 667 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 RNF112Q9ULX5 631 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 GLP2RO95838 553 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 ARF4P18085 180 aaPredicted RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 RPA3P35244 121 aaPredicted RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SERPINB5P36952 375 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SLC1A6P48664 564 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 NUDT18Q6ZVK8 323 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 NRDE2Q9H7Z3 1164 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 AAASQ9NRG9 546 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 DERAQ9Y315 318 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 SPDYE5A6NIY4 337 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 CD151P48509 253 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 AASDHQ4L235 1098 aaPredicted RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 TMCO4Q5TGY1 634 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 TDRD5Q8NAT2 981 aaKnown RBP17.16■□□□□ 0.34
PHRF1-201ENST00000264555 B3GALNT2Q8NCR0 500 aa17.16■□□□□ 0.34
PHRF1-201ENST00000264555 WARS2Q9UGM6 360 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms