RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CATSPER2Q96P56 530 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 APOL2Q9BQE5 337 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 HEG1Q9ULI3 1381 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 GLRA3O75311 464 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 IGFBP4P22692 258 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ITGA9Q13797 1035 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ZC2HC1CQ53FD0 456 aaPredicted RBP11.65□□□□□ -0.54
PTPN4-201ENST00000263708 DSELQ8IZU8 1212 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ZNF232Q9UNY5 417 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 STX16-NPEPL1H3BU86 382 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 STX16O14662 325 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 RBP3P10745 1247 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 TMEM8AQ9HCN3 771 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 HAO1Q9UJM8 370 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SYNPO2Q9UMS6 1093 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 AP4E1Q9UPM8 1137 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 CFAP74Q9C0B2 1584 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 PSIP1O75475 530 aaKnown RBP11.65□□□□□ -0.55
PTPN4-201ENST00000263708 CBX5P45973 191 aa11.65□□□□□ -0.55
PTPN4-201ENST00000263708 SLC12A8A0AV02 714 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 GMFGO60234 142 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CLPTM1O96005 669 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CCDC166P0CW27 439 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 RPL9P32969 192 aaKnown RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 KLHL23Q8NBE8 558 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 GPAMQ9HCL2 828 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ADPRHL2Q9NX46 363 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 AMD1P17707 334 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ZNHIT3Q15649 155 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 MFSD7Q6UXD7 560 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 EEF1AKMT1Q8WVE0 214 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ARHGAP28Q9P2N2 729 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ENOPH1Q9UHY7 261 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CCT8L1PA6NM43 557 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 INPP4BO15327 924 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ACADSP16219 412 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 RPL4P36578 427 aaKnown RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 KCNJ1P48048 391 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 AGBL2Q5U5Z8 902 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 SAPCD2Q86UD0 394 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 DCP1AQ9NPI6 582 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CCDC177Q9NQR7 707 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 LIMD1Q9UGP4 676 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CES2O00748 559 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 TSPAN3O60637 253 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 SEC22BO75396 215 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 MAPK10P53779 464 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 SCARF1Q14162 830 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 HLFQ16534 295 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ZNF621Q6ZSS3 439 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 TMEM120AQ9BXJ8 343 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CCSER1Q9C0I3 900 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 MIR1-1HGQ9H1L0 117 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ZNF37AP17032 561 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 PLD1Q13393 1074 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 PRAMEF18Q5VWM3 479 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 JAMLQ86YT9 394 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 SLC22A9Q8IVM8 553 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CDK5RAP1Q96SZ6 601 aaKnown RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 OMDQ99983 421 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 PRMT7Q9NVM4 692 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 EHD3Q9NZN3 535 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CHP2O43745 196 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 RAP1GAPP47736 663 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 RXRGP48443 463 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 CENPCQ03188 943 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 PDPK2PQ6A1A2 396 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 DNAJC14Q6Y2X3 702 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 PIGBQ92521 554 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 BDH2Q9BUT1 245 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 MLPHQ9BV36 600 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ADGRG1Q9Y653 693 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 TYMPP19971 482 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 S100A1P23297 94 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 RASSF6Q6ZTQ3 369 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ZNF655Q8N720 491 aaPredicted RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 NIF3L1Q9GZT8 377 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 MRPS7Q9Y2R9 242 aaKnown RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 OPLAHO14841 1288 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 HSD17B3P37058 310 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 MZT2AQ6P582 158 aa11.64□□□□□ -0.55
PTPN4-201ENST00000263708 ZCCHC2Q9C0B9 1178 aaKnown RBP11.64□□□□□ -0.55
PTPN4-201ENST00000263708 PLEKHG1Q9ULL1 1385 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 UBE2QL1A1L167 161 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 RAD51BO15315 384 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 RAD51CO43502 376 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 OR7A10O76100 309 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 MT-CO1P00395 513 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 OMPP47874 163 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 ACOT1Q86TX2 421 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 TLR8Q9NR97 1041 aaKnown RBP11.63□□□□□ -0.55
PTPN4-201ENST00000263708 SHOC2Q9UQ13 582 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 COL15A1P39059 1388 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 MOXD2PA6NHM9 499 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 USP27XA6NNY8 438 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 TCHHL1Q5QJ38 904 aaPredicted RBP11.63□□□□□ -0.55
PTPN4-201ENST00000263708 RORBQ92753 470 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 FAM50BQ9Y247 325 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 CETPP11597 493 aa11.63□□□□□ -0.55
PTPN4-201ENST00000263708 MTF1Q14872 753 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms