RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 UHMK1Q8TAS1 419 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SYTL5Q8TDW5 730 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 COG1Q8WTW3 980 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 COPS4Q9BT78 406 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 HEMGNQ9BXL5 484 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 OSBPL3Q9H4L5 887 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 LDAHQ9H6V9 325 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MIEF1Q9NQG6 463 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CNOT8Q9UFF9 292 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 COL4A3BPQ9Y5P4 624 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C9J4A7 227 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 OXSR1O95747 527 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NPR2P20594 1047 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ADCY7P51828 1080 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ARFIP2P53365 341 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EPHB3P54753 998 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 VSNL1P62760 191 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 USP4Q13107 963 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MAPRE2Q15555 327 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KBTBD12Q3ZCT8 623 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 AASDHQ4L235 1098 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FAM102BQ5T8I3 360 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 LPCAT2Q7L5N7 544 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PACS2Q86VP3 889 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CROCCP3Q8IVE0 287 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SCN4BQ8IWT1 228 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CHERPQ8IWX8 916 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 DENND6BQ8NEG7 585 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CHTF18Q8WVB6 975 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TOP1MTQ969P6 601 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PBKQ96KB5 322 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NEDD4LQ96PU5 975 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TIPINQ9BVW5 301 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MUC3BQ9H195 1237 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SEMA6CQ9H3T2 930 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MLXQ9UH92 298 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FAM153AQ9UHL3 310 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 HS3ST3A1Q9Y663 406 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FPGT-TNNI3KV9GXZ4 949 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 IQGAP2Q13576 1575 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EVPLLA8MZ36 301 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 C2orf74A8MZ97 194 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ERVV-2B6SEH9 535 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EIF3HO15372 352 aaKnown RBP eCLIP2.85□□□□□ -1.956e-7■■■■□ 20.9
SCN1A-219ENST00000641575 GRAP2O75791 330 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NUDT14O95848 222 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PPP2R2AP63151 447 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SPIRE1Q08AE8 756 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ATP1A4Q13733 1029 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF235Q14590 738 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 LAYNQ6UX15 382 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MACC1Q6ZN28 852 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MICU2Q8IYU8 434 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 LIX1Q8N485 282 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 XXYLT1Q8NBI6 393 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FUBP3Q96I24 572 aaKnown RBP eCLIP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 USP28Q96RU2 1077 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 RHOBTB2Q9BYZ6 727 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ARHGEF38Q9NXL2 777 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KCND2Q9NZV8 630 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 COMMD9Q9P000 198 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 RABL2AQ9UBK7 228 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FIS1Q9Y3D6 152 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SPEF1Q9Y4P9 236 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEB2O15479 319 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ABCB7O75027 752 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 INMTO95050 263 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF202O95125 648 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 BCL10O95999 233 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PAX7P23759 505 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PGM1P36871 562 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TALDO1P37837 337 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLCO1A2P46721 670 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ARF3P61204 181 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 POLR2FP61218 127 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ARF1P84077 181 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TCP10Q12799 353 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KYNUQ16719 465 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC36Q1X8D7 754 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 C10orf76Q5T2E6 689 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ATG14Q6ZNE5 492 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TMC3Q7Z5M5 1100 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PRPF39Q86UA1 669 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MLKLQ8NB16 471 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MCUQ8NE86 351 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 OR8K1Q8NGG5 319 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GIPC3Q8TF64 312 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 HEXDCQ8WVB3 486 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SSH1Q8WYL5 1049 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NKD1Q969G9 470 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 C7orf25Q9BPX7 421 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NOL6Q9H6R4 1146 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 HMG20AQ9NP66 347 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 DUS2Q9NX74 493 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SCN3BQ9NY72 215 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ANAPC7Q9UJX3 599 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SNX8Q9Y5X2 465 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 YTHDC2Q9H6S0 1430 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ZNFX1Q9P2E3 1918 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TEX13CA0A0J9YWL9 993 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms