RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ERBB2P04626 1255 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 CYP1A1P04798 512 aaPredicted RBP10.29□□□□□ -0.76
CLN3-261ENST00000637686 CYP17A1P05093 508 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 FYNP06241 537 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 PLEKP08567 350 aaPredicted RBP10.29□□□□□ -0.76
CLN3-261ENST00000637686 FAM228BP0C875 321 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 NCAM1P13591 858 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 CHRNB2P17787 502 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 GALK1P51570 392 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 VAV2P52735 878 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 AMPD2Q01433 879 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 FMO1Q01740 532 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 CENPCQ03188 943 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 ARID5AQ03989 594 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 FZD5Q13467 585 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 TCEAL1Q15170 157 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 PTPN20Q4JDL3 420 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 NAIF1Q69YI7 327 aaPredicted RBP10.29□□□□□ -0.76
CLN3-261ENST00000637686 OR6B2Q6IFH4 312 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 ALKBH5Q6P6C2 394 aaKnown RBP10.29□□□□□ -0.76
CLN3-261ENST00000637686 C1orf228Q6PIY5 440 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 RHBDF2Q6PJF5 856 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 DTWD2Q8NBA8 298 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 FAM149B1Q96BN6 582 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 OTUB2Q96DC9 234 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 ZNF830Q96NB3 372 aaPredicted RBP10.29□□□□□ -0.76
CLN3-261ENST00000637686 LMAN1LQ9HAT1 526 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.29□□□□□ -0.76
CLN3-261ENST00000637686 DLGAP2Q9P1A6 1054 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 ADAMTS1Q9UHI8 967 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 LSM7Q9UK45 103 aaKnown RBP10.29□□□□□ -0.76
CLN3-261ENST00000637686 NAALADL1Q9UQQ1 740 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 PPP2R2CQ9Y2T4 447 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 HCN4Q9Y3Q4 1203 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 ZDBF2Q9HCK1 2354 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 A0A0A6YYK5 440 aaPredicted RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 SART1O43290 800 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 MSI1O43347 362 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 RTN2O75298 545 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 KLKB1P03952 638 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 MYBL1P10243 752 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 CHRNB1P11230 501 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 ADH5P11766 374 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 UNGP13051 313 aaPredicted RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 MSNP26038 577 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 CORO1AP31146 461 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 SNX16P57768 344 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 TAF5Q15542 800 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 TRIP4Q15650 581 aaPredicted RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 GAB4Q2WGN9 574 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 LY6G5CQ5SRR4 150 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 SYPL2Q5VXT5 272 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 NAA35Q5VZE5 725 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 MSANTD2Q6P1R3 559 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 Q6ZNB5 142 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 FAM183BPQ6ZVS7 135 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 ERICH1Q86X53 443 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 TMEM25Q86YD3 366 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 PHF13Q86YI8 300 aaPredicted RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 CCAR2Q8N163 923 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 IPO4Q8TEX9 1081 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 CPA5Q8WXQ8 436 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 CLDN23Q96B33 292 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 TRIM11Q96F44 468 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 PIWIL1Q96J94 861 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 SYNCQ9H7C4 482 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 FBRSL1Q9HCM7 1045 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 RBM12Q9NTZ6 932 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 AGO1Q9UL18 857 aaKnown RBP10.28□□□□□ -0.76
CLN3-261ENST00000637686 PYCARDQ9ULZ3 195 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 PCDHA13Q9Y5I0 950 aa10.28□□□□□ -0.76
CLN3-261ENST00000637686 F5P12259 2224 aa10.27□□□□□ -0.76
CLN3-261ENST00000637686 MIA3Q5JRA6 1907 aa10.27□□□□□ -0.76
CLN3-261ENST00000637686 ANKRD62A6NC57 917 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 TRDMT1O14717 391 aaKnown RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 CAPN9O14815 690 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 GALR2O43603 387 aaPredicted RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 ZNF500O60304 480 aaPredicted RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 GRAP2O75791 330 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 ADH1CP00326 375 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 H2AFZP0C0S5 128 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 OPRD1P41143 372 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 MAGEA1P43355 309 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 RPS9P46781 194 aaKnown RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 SLC6A11P48066 632 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 HARS2P49590 506 aaKnown RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 NUBP1P53384 320 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 GSCP56915 257 aaPredicted RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 YWHAZP63104 245 aaKnown RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 NOMO3P69849 1222 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 SLC6A3Q01959 620 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 GAD2Q05329 585 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 GFPT1Q06210 699 aaPredicted RBP10.27□□□□□ -0.77
CLN3-261ENST00000637686 GRSF1Q12849 480 aaKnown RBP eCLIP10.27□□□□□ -0.77
CLN3-261ENST00000637686 CLEC16AQ2KHT3 1053 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 ANO4Q32M45 955 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 C2CD6Q53TS8 623 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 TMEM196Q5HYL7 178 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 EFHC1Q5JVL4 640 aa10.27□□□□□ -0.77
CLN3-261ENST00000637686 CCDC122Q5T0U0 273 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms