RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 EIF4EBP2Q13542 120 aaPredicted RBP17.49■□□□□ 0.39
CLN3-252ENST00000636907 MTMR3Q13615 1198 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 C7orf61Q8IZ16 206 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 CCDC89Q8N998 374 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 RNF139Q8WU17 664 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 ART4Q93070 314 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 SNF8Q96H20 258 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 SMOC2Q9H3U7 446 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 WDCPQ9H6R7 721 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 VIPAS39Q9H9C1 493 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 CXXC1Q9P0U4 656 aaPredicted RBP17.49■□□□□ 0.39
CLN3-252ENST00000636907 WHRNQ9P202 907 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 RCOR3Q9P2K3 495 aaPredicted RBP17.49■□□□□ 0.39
CLN3-252ENST00000636907 NUDT5Q9UKK9 219 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 CARNS1A5YM72 827 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 FAM72CH0Y354 149 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 H3BRJ5 948 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 SGK1O00141 431 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 TP73O15350 636 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 IRAK2O43187 625 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ZSCAN5DPP0CG00 497 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 RBP3P10745 1247 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ATF6P18850 670 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 AMPD1P23109 780 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ADCY8P40145 1251 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 HTRA4P83105 476 aaPredicted RBP17.48■□□□□ 0.39
CLN3-252ENST00000636907 ARL13BQ3SXY8 428 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 TMEM240Q5SV17 173 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 FAM72AQ5TYM5 149 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 FAM72DQ6L9T8 149 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ZC3H18Q86VM9 953 aaKnown RBP17.48■□□□□ 0.39
CLN3-252ENST00000636907 FAM72BQ86X60 149 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ARHGAP18Q8N392 663 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 MREGQ8N565 214 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 GIPC2Q8TF65 315 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 CASP10Q92851 521 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 FBXO32Q969P5 355 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ZBTB9Q96C00 473 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 TKTL2Q9H0I9 626 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ETNK2Q9NVF9 386 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 SFMBT1Q9UHJ3 866 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 MFHAS1Q9Y4C4 1052 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 HEY1Q9Y5J3 304 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 EEF2KO00418 725 aaKnown RBP17.48■□□□□ 0.39
CLN3-252ENST00000636907 CREB3O43889 395 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 MAP3K6O95382 1288 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 URODP06132 367 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 LINC00271P0C7V0 271 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ZFXP17010 805 aaPredicted RBP17.48■□□□□ 0.39
CLN3-252ENST00000636907 ITIH2P19823 946 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 HSPA9P38646 679 aaKnown RBP17.48■□□□□ 0.39
CLN3-252ENST00000636907 GDF10P55107 478 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 TAF10Q12962 218 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 CALCOCO2Q13137 446 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 SEMA3BQ13214 749 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 NCBP2-AS2Q69YL0 99 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 B4GALNT4Q76KP1 1039 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 VPS52Q8N1B4 723 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 AUTS2Q8WXX7 1259 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 ARHGEF4Q9NR80 690 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 COMMD8Q9NX08 183 aa17.48■□□□□ 0.39
CLN3-252ENST00000636907 AFF4Q9UHB7 1163 aaKnown RBP17.48■□□□□ 0.39
CLN3-252ENST00000636907 SLC38A8A6NNN8 435 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 MSI1O43347 362 aaKnown RBP17.47■□□□□ 0.39
CLN3-252ENST00000636907 ABLIM3O94929 683 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 SEC24AO95486 1093 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 IFNB1P01574 187 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 PPM1AP35813 382 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 GBE1Q04446 702 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 GREB1Q4ZG55 1949 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 PSRC1Q6PGN9 363 aaPredicted RBP17.47■□□□□ 0.39
CLN3-252ENST00000636907 DARS2Q6PI48 645 aaKnown RBP17.47■□□□□ 0.39
CLN3-252ENST00000636907 UNC45BQ8IWX7 931 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 FIBCD1Q8N539 461 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 ZNF461Q8TAF7 563 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 CCHCR1Q8TD31 782 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 RSAD2Q8WXG1 361 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 RNF34Q969K3 372 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 PCDH9Q9HC56 1237 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 AAASQ9NRG9 546 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 PCDHB12Q9Y5F1 795 aa17.47■□□□□ 0.39
CLN3-252ENST00000636907 SPDYE4A6NLX3 237 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 H7C0C1 242 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 SYN1P17600 705 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 DNAJB2P25686 324 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 ATP5OP48047 213 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 TUFMP49411 452 aaKnown RBP17.46■□□□□ 0.39
CLN3-252ENST00000636907 ITGA8P53708 1063 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 DHX9Q08211 1270 aaKnown RBP17.46■□□□□ 0.39
CLN3-252ENST00000636907 SLC10A2Q12908 348 aaPredicted RBP17.46■□□□□ 0.39
CLN3-252ENST00000636907 DPYSQ14117 519 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 P3H1Q32P28 736 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 RASIP1Q5U651 963 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 MSANTD2Q6P1R3 559 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 RHBDF2Q6PJF5 856 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 RFX8Q6ZV50 586 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 TMC3Q7Z5M5 1100 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 LRRC45Q96CN5 670 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 ZBED2Q9BTP6 218 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 FAM129AQ9BZQ8 928 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms