RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CREB3O43889 395 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 ZDHHC11BP0C7U3 371 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 KLRC2P26717 231 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 PLD1Q13393 1074 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 GLE1Q53GS7 698 aaKnown RBP20.87■□□□□ 0.93
CLN3-250ENST00000636839 LILRA6Q6PI73 481 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 C1orf228Q6PIY5 440 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 MIB1Q86YT6 1006 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 MAP7D3Q8IWC1 876 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 CCDC33Q8N5R6 958 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 ACTL9Q8TC94 416 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 CSPG4P5Q96PW8 444 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 MAK16Q9BXY0 300 aaKnown RBP20.87■□□□□ 0.93
CLN3-250ENST00000636839 TRIM31Q9BZY9 425 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 RAB21Q9UL25 225 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 TARSL2A2RTX5 802 aaKnown RBP20.86■□□□□ 0.93
CLN3-250ENST00000636839 F9P00740 461 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 H2AFXP16104 143 aaPredicted RBP20.86■□□□□ 0.93
CLN3-250ENST00000636839 AMPD1P23109 780 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 OTUD4Q01804 1114 aaKnown RBP20.86■□□□□ 0.93
CLN3-250ENST00000636839 CCNG2Q16589 344 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 DNAJB7Q7Z6W7 309 aaPredicted RBP20.86■□□□□ 0.93
CLN3-250ENST00000636839 ZNF512Q96ME7 567 aaPredicted RBP20.86■□□□□ 0.93
CLN3-250ENST00000636839 TRIM62Q9BVG3 475 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 TLR9Q9NR96 1032 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 HSFX1Q9UBD0 423 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 PCYOX1Q9UHG3 505 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 EFR3BQ9Y2G0 817 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 GBF1Q92538 1859 aa20.86■□□□□ 0.93
CLN3-250ENST00000636839 LIASO43766 372 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 EFHC2Q5JST6 749 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 C10orf120Q5SQS8 335 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 CCDC70Q6NSX1 233 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 JAMLQ86YT9 394 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 GPR65Q8IYL9 337 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 ARHGAP18Q8N392 663 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 PLD5Q8N7P1 536 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 CCDC26Q8TAB7 109 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 MAIP1Q8WWC4 291 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 CASKIN2Q8WXE0 1202 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 UBE2OQ9C0C9 1292 aaKnown RBP20.85■□□□□ 0.93
CLN3-250ENST00000636839 LZTS1Q9Y250 596 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 C5orf67F2Z3F1 127 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 TRIP13Q15645 432 aaPredicted RBP20.85■□□□□ 0.93
CLN3-250ENST00000636839 SND1Q7KZF4 910 aaKnown RBP eCLIP20.85■□□□□ 0.931e-7■■■□□ 15.8
CLN3-250ENST00000636839 NTAN1Q96AB6 310 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 FAF2Q96CS3 445 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 ZNF670Q9BS34 389 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 ZNF334Q9HCZ1 680 aaPredicted RBP20.85■□□□□ 0.93
CLN3-250ENST00000636839 CLIC5Q9NZA1 410 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 SSX2IPQ9Y2D8 614 aa20.85■□□□□ 0.93
CLN3-250ENST00000636839 ZNF840PA6NDX5 716 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 MOCS2O96007 188 aaPredicted RBP20.84■□□□□ 0.93
CLN3-250ENST00000636839 HMBSP08397 361 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 GBP1P32455 592 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 CARSP49589 748 aaKnown RBP20.84■□□□□ 0.93
CLN3-250ENST00000636839 MSANTD2Q6P1R3 559 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 WDR93Q6P2C0 686 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 MAATS1Q7Z4T9 603 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 GLIS1Q8NBF1 620 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 IFT81Q8WYA0 676 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 SIK2Q9H0K1 926 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 DPH5Q9H2P9 285 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 COMMD8Q9NX08 183 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 STK39Q9UEW8 545 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 IRAK3Q9Y616 596 aa20.84■□□□□ 0.93
CLN3-250ENST00000636839 TLR5O60602 858 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 ADH1AP07327 375 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 CSH1P0DML2 217 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 CSH2P0DML3 217 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 FNTAP49354 379 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 CLCN6P51797 869 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 CREMQ03060 361 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 SCAPQ12770 1279 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 SLC10A2Q12908 348 aaPredicted RBP20.83■□□□□ 0.93
CLN3-250ENST00000636839 TMEM150AQ86TG1 271 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.83■□□□□ 0.93
CLN3-250ENST00000636839 SLC22A17Q8WUG5 538 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 CCDC114Q96M63 670 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 PBX4Q9BYU1 374 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 GDF3Q9NR23 364 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.83■□□□□ 0.93
CLN3-250ENST00000636839 MARCH2Q9P0N8 246 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 HEY1Q9Y5J3 304 aa20.83■□□□□ 0.93
CLN3-250ENST00000636839 H0YGN5 161 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 NRG2O14511 850 aaPredicted RBP20.83■□□□□ 0.92
CLN3-250ENST00000636839 PER2O15055 1255 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 PAGE1O75459 146 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 SEC31AO94979 1220 aaKnown RBP20.83■□□□□ 0.92
CLN3-250ENST00000636839 RBM10P98175 930 aaKnown RBP20.83■□□□□ 0.92
CLN3-250ENST00000636839 GBE1Q04446 702 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 SEMA3BQ13214 749 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 BYSLQ13895 437 aaKnown RBP20.83■□□□□ 0.92
CLN3-250ENST00000636839 TAF12Q16514 161 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 SLC9A4Q6AI14 798 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 CCNI2Q6ZMN8 369 aaPredicted RBP20.83■□□□□ 0.92
CLN3-250ENST00000636839 PSTKQ8IV42 348 aaKnown RBP20.83■□□□□ 0.92
CLN3-250ENST00000636839 KREMEN2Q8NCW0 462 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 FCRL2Q96LA5 508 aaPredicted RBP20.83■□□□□ 0.92
CLN3-250ENST00000636839 MYRFLQ96LU7 910 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms