RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 EPB41P11171 864 aaKnown RBP16.92■□□□□ 0.3
CLN3-246ENST00000636228 CD59P13987 128 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 CD6P30203 668 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 MCCD1P59942 119 aaPredicted RBP16.92■□□□□ 0.3
CLN3-246ENST00000636228 PDE4CQ08493 712 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 STARD3Q14849 445 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 EDRF1Q3B7T1 1238 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 PLEKHG6Q3KR16 790 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 DCAF17Q5H9S7 520 aaPredicted RBP16.92■□□□□ 0.3
CLN3-246ENST00000636228 CACUL1Q86Y37 369 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 ANKRD52Q8NB46 1076 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 UBA3Q8TBC4 463 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 DDI1Q8WTU0 396 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 ERCC4Q92889 916 aaPredicted RBP16.92■□□□□ 0.3
CLN3-246ENST00000636228 TOE1Q96GM8 510 aaKnown RBP16.92■□□□□ 0.3
CLN3-246ENST00000636228 CDK5RAP1Q96SZ6 601 aaKnown RBP16.92■□□□□ 0.3
CLN3-246ENST00000636228 GPR174Q9BXC1 333 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 UBXN6Q9BZV1 441 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 DCLK3Q9C098 648 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 CIPCQ9C0C6 399 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 KLK13Q9UKR3 277 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 STRIP2Q9ULQ0 834 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 ZBED1O96006 694 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 PRCPP42785 496 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 LRMPQ12912 555 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 ZNF234Q14588 700 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 TMEM215Q68D42 235 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 BHLHA9Q7RTU4 235 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 TMPRSS6Q8IU80 811 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 ARHGAP18Q8N392 663 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 EDEM1Q92611 657 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 GATA6Q92908 595 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 SCAND2PQ9GZW5 306 aaPredicted RBP16.91■□□□□ 0.3
CLN3-246ENST00000636228 ITM2CQ9NQX7 267 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 ELOVL2Q9NXB9 296 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 WSB2Q9NYS7 404 aaPredicted RBP16.91■□□□□ 0.3
CLN3-246ENST00000636228 SFMBT1Q9UHJ3 866 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 TSPAN16Q9UKR8 245 aa16.91■□□□□ 0.3
CLN3-246ENST00000636228 CEP295Q9C0D2 2601 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 UPK3BL1B0FP48 263 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 UPK3BL2E5RIL1 263 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 SH3BP5O60239 455 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 STX10O60499 249 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 CYBBP04839 570 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 CD19P15391 556 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 PRKCHP24723 683 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 PMS1P54277 932 aaKnown RBP16.9■□□□□ 0.3
CLN3-246ENST00000636228 SYCP2LQ5T4T6 812 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 ANKRD40Q6AI12 368 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 PM20D1Q6GTS8 502 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 RABEPKQ7Z6M1 372 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 FMNL3Q8IVF7 1028 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 CHCHD4Q8N4Q1 142 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 KDF1Q8NAX2 398 aaPredicted RBP16.9■□□□□ 0.3
CLN3-246ENST00000636228 FOXJ1Q92949 421 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 SIPA1Q96FS4 1042 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 MIR1-1HGQ9H1L0 117 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 ASPMQ8IZT6 3477 aa16.9■□□□□ 0.3
CLN3-246ENST00000636228 TNRC6BQ9UPQ9 1833 aaKnown RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 CFAP47Q6ZTR5 3102 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 YJEFN3A6XGL0 299 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 MEI4A8MW99 385 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 E7ENQ6 273 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 SYNCRIPO60506 623 aaKnown RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 EPHX1P07099 455 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 SYPP08247 313 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 NCAM1P13591 858 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 HLA-EP13747 358 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 TPMTP51580 245 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 COPAP53621 1224 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 SLC8A3P57103 927 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 ADIGQ0VDE8 80 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 CUL2Q13617 745 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 ENPP2Q13822 863 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 TRIP4Q15650 581 aaPredicted RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 WDR45BQ5MNZ6 344 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 ANKS1BQ7Z6G8 1248 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 FAM124AQ86V42 546 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 CPXM2Q8N436 756 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 TTC39CQ8N584 583 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 ZNF366Q8N895 744 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 RBBP8NLQ8NC74 664 aaPredicted RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 UCMAQ8WVF2 138 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 PLD4Q96BZ4 506 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 FAXDC2Q96IV6 333 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 FAM124BQ9H5Z6 455 aaPredicted RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 LRRC4Q9HBW1 653 aa16.89■□□□□ 0.29
CLN3-246ENST00000636228 DNAAF2Q9NVR5 837 aaKnown RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 USP36Q9P275 1121 aaKnown RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 MYO18AQ92614 2054 aaKnown RBP16.89■□□□□ 0.29
CLN3-246ENST00000636228 GON4LQ3T8J9 2241 aa16.88■□□□□ 0.29
CLN3-246ENST00000636228 TRIM49BA6NDI0 452 aa16.88■□□□□ 0.29
CLN3-246ENST00000636228 PIK3R2O00459 728 aa16.88■□□□□ 0.29
CLN3-246ENST00000636228 XPO1O14980 1071 aaKnown RBP16.88■□□□□ 0.29
CLN3-246ENST00000636228 MSI1O43347 362 aaKnown RBP16.88■□□□□ 0.29
CLN3-246ENST00000636228 CALCAP01258 141 aa16.88■□□□□ 0.29
CLN3-246ENST00000636228 LCP1P13796 627 aa16.88■□□□□ 0.29
CLN3-246ENST00000636228 SGO2Q562F6 1265 aa16.88■□□□□ 0.29
CLN3-246ENST00000636228 DCAF12L1Q5VU92 463 aa16.88■□□□□ 0.29
CLN3-246ENST00000636228 BSPRYQ5W0U4 402 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms