RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 GRHL1Q9NZI5 618 aa13.54□□□□□ -0.24
TCF3-220ENST00000611869 PRRG1O14668 218 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 TSPAN1O60635 241 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 KPNA6O60684 536 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 SMIM24O75264 130 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 ABCG1P45844 678 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 PIP4K2CQ8TBX8 421 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 SOCS4Q8WXH5 440 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 LGMNQ99538 433 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 FICDQ9BVA6 458 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 UPF3AQ9H1J1 476 aaKnown RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 DNAJC16Q9Y2G8 782 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 NAV1Q8NEY1 1877 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 CASQ2O14958 399 aaPredicted RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 TREHO43280 583 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 DARSP14868 501 aaKnown RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 DRD4P21917 467 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 CDKN2BP42772 138 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 RECQLP46063 649 aaPredicted RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 TWF1Q12792 350 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 QPCTQ16769 361 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 ZCCHC23Q6ZST2 131 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 LRRC52Q8N7C0 313 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 LMO3Q8TAP4 145 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 USP6NLQ92738 828 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 ASIC4Q96FT7 647 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 ZFP42Q96MM3 310 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 MUC3BQ9H195 1237 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 FZD8Q9H461 694 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 GPBP1L1Q9HC44 474 aaPredicted RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 SLCO1B3Q9NPD5 702 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 DMAP1Q9NPF5 467 aaPredicted RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 PLCH1Q4KWH8 1693 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 SMIM28A0A1B0GU29 152 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 DGKIO75912 1065 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 RGS20O76081 388 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 HOXC6P09630 235 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 MMP13P45452 471 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 MAP7Q14244 749 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 FASTKD3Q14CZ7 662 aaKnown RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 TAF5Q15542 800 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 SH3D19Q5HYK7 790 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 LCLAT1Q6UWP7 414 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 NDRG1Q92597 394 aaKnown RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 CENPTQ96BT3 561 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 PRDM12Q9H4Q4 367 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 LRRC4CQ9HCJ2 640 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 NDFIP2Q9NV92 336 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 FAM8A1Q9UBU6 413 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 PRKAG2Q9UGJ0 569 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 DSEQ9UL01 958 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 AAR2Q9Y312 384 aaKnown RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 CDY1Q9Y6F8 540 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 SLC12A8A0AV02 714 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 GLTPD2A6NH11 291 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 KCNA4P22459 653 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 GEMP55040 296 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 PDAP1Q13442 181 aaKnown RBP13.53□□□□□ -0.24
TCF3-220ENST00000611869 EFTUD2Q15029 972 aaKnown RBP eCLIP13.53□□□□□ -0.241e-6■■■■□ 26.7
TCF3-220ENST00000611869 C9orf57Q5W0N0 161 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 PMF1Q6P1K2 205 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 ATP6V0D2Q8N8Y2 350 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 APOPT1Q96IL0 206 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 EGFL8Q99944 293 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 NT5MQ9NPB1 228 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 ST3GAL5Q9UNP4 418 aa13.53□□□□□ -0.24
TCF3-220ENST00000611869 C22orf31O95567 290 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 SLC2A3P11169 496 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 SMPD1P17405 629 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 PSMB4P28070 264 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 CCR1P32246 355 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 SNX17Q15036 470 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 FAM110CQ1W6H9 321 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 ANKRD20A2Q5SQ80 823 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 N4BP2L1Q5TBK1 243 aaPredicted RBP13.52□□□□□ -0.24
TCF3-220ENST00000611869 ANKRD20A1Q5TYW2 823 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 TMEM237Q96Q45 408 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 PCDH18Q9HCL0 1135 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 STARD7Q9NQZ5 370 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 DCDC2Q9UHG0 476 aa13.52□□□□□ -0.24
TCF3-220ENST00000611869 A0A1W2PPM1 405 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 ALOX15BO15296 676 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 NDUFS3O75489 264 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 CCND1P24385 295 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 HARS2P49590 506 aaKnown RBP13.52□□□□□ -0.25
TCF3-220ENST00000611869 NFE2Q16621 373 aaPredicted RBP13.52□□□□□ -0.25
TCF3-220ENST00000611869 DNAL1Q4LDG9 190 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 ANKRD36CQ5JPF3 1778 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 PACS2Q86VP3 889 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 CALML6Q8TD86 181 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 SPDL1Q96EA4 605 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 TMA16Q96EY4 203 aaKnown RBP13.52□□□□□ -0.25
TCF3-220ENST00000611869 NSMCE4AQ9NXX6 385 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 ZNF112Q9UJU3 913 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 PCDHGC3Q9UN70 934 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.52□□□□□ -0.25
TCF3-220ENST00000611869 TIMM44O43615 452 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 RNF219Q5W0B1 726 aaPredicted RBP13.52□□□□□ -0.25
TCF3-220ENST00000611869 KAT2BQ92831 832 aa13.52□□□□□ -0.25
TCF3-220ENST00000611869 RMDN2Q96LZ7 410 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms