RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 TULP2O00295 520 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 ARHGAP33O14559 1287 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 OPHN1O60890 802 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 ZBED1O96006 694 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 CYBBP04839 570 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 IL12RB1P42701 662 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 PDE4CQ08493 712 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 GOLGA7BQ2TAP0 167 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 SYCP2LQ5T4T6 812 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 PM20D1Q6GTS8 502 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 PIP4P1Q86T03 277 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 CPXM2Q8N436 756 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 MINDY1Q8N5J2 469 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 OR2I1PQ8NGU4 316 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 DDI1Q8WTU0 396 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 UCMAQ8WVF2 138 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 NDRG1Q92597 394 aaKnown RBP13.78□□□□□ -0.2
RPS28-204ENST00000602140 SCNM1Q9BWG6 230 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 ADAM33Q9BZ11 813 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 ULBP1Q9BZM6 244 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 FAM124BQ9H5Z6 455 aaPredicted RBP13.78□□□□□ -0.2
RPS28-204ENST00000602140 PRDM16Q9HAZ2 1276 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 RMND1Q9NWS8 449 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 THAP10Q9P2Z0 257 aaPredicted RBP13.78□□□□□ -0.2
RPS28-204ENST00000602140 TSPAN16Q9UKR8 245 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 CLEC4EQ9ULY5 219 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 COQ4Q9Y3A0 265 aa13.78□□□□□ -0.2
RPS28-204ENST00000602140 ASCC3Q8N3C0 2202 aaKnown RBP13.78□□□□□ -0.2
RPS28-204ENST00000602140 SPAARA0A1B0GVQ0 90 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 UPK3BL1B0FP48 263 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 UPK3BL2E5RIL1 263 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 XPO1O14980 1071 aaKnown RBP13.77□□□□□ -0.21
RPS28-204ENST00000602140 NPC1O15118 1278 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 SYPP08247 313 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 MAOBP27338 520 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 CD6P30203 668 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 ZNF132P52740 706 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 BCAT1P54687 386 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 CUL2Q13617 745 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 ENPP2Q13822 863 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 ZNF234Q14588 700 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 PLEKHG6Q3KR16 790 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 SGO2Q562F6 1265 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 BHLHA9Q7RTU4 235 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 ANKS1BQ7Z6G8 1248 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 METTL3Q86U44 580 aaKnown RBP13.77□□□□□ -0.21
RPS28-204ENST00000602140 ASPMQ8IZT6 3477 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 FOXJ1Q92949 421 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 PLD4Q96BZ4 506 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 TOE1Q96GM8 510 aaKnown RBP13.77□□□□□ -0.21
RPS28-204ENST00000602140 PIWIL1Q96J94 861 aaKnown RBP13.77□□□□□ -0.21
RPS28-204ENST00000602140 TSG101Q99816 390 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 MKRN2Q9H000 416 aaKnown RBP13.77□□□□□ -0.21
RPS28-204ENST00000602140 LRRC4Q9HBW1 653 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 ELOVL2Q9NXB9 296 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 ADAMTS9Q9P2N4 1935 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 HESX1Q9UBX0 185 aa13.77□□□□□ -0.21
RPS28-204ENST00000602140 PI4KAP42356 2102 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 SLC16A3O15427 465 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 SYNCRIPO60506 623 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 CD19P15391 556 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 GNSP15586 552 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 HARS2P49590 506 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 PMS1P54277 932 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 SIM1P81133 766 aaPredicted RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 FKBP3Q00688 224 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 ADIGQ0VDE8 80 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 BST2Q10589 180 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 TRIP4Q15650 581 aaPredicted RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 WDR45BQ5MNZ6 344 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 ZNF658Q5TYW1 1059 aaPredicted RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 ANKRD40Q6AI12 368 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 TMPRSS6Q8IU80 811 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 FMNL3Q8IVF7 1028 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 FAM217AQ8IXS0 508 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 ZC3H3Q8IXZ2 948 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 FMR1NBQ8N0W7 255 aaPredicted RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 UBA3Q8TBC4 463 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 SORCS1Q8WY21 1168 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 IPO9Q96P70 1041 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 GPR174Q9BXC1 333 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 TMEM121BQ9BXQ6 578 aaPredicted RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 SLC2A11Q9BYW1 496 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 CIPCQ9C0C6 399 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 ITM2CQ9NQX7 267 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 OLA1Q9NTK5 396 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 WSB2Q9NYS7 404 aaPredicted RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 USP36Q9P275 1121 aaKnown RBP13.76□□□□□ -0.21
RPS28-204ENST00000602140 SUSD2Q9UGT4 822 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 PCDH15Q96QU1 1955 aa13.76□□□□□ -0.21
RPS28-204ENST00000602140 TRIM49BA6NDI0 452 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 KCNJ18B7U540 433 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 HYAL3O43820 417 aaPredicted RBP13.75□□□□□ -0.21
RPS28-204ENST00000602140 TSPAN3O60637 253 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 VDRP11473 427 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 NCAM1P13591 858 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 CD59P13987 128 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 PRKCHP24723 683 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 TPMTP51580 245 aa13.75□□□□□ -0.21
RPS28-204ENST00000602140 YWHAEP62258 255 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms