RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ERMARDQ5T6L9 678 aa21■□□□□ 0.95
UPF1-207ENST00000599848 SLC13A5Q86YT5 568 aaPredicted RBP21■□□□□ 0.95
UPF1-207ENST00000599848 AASDHPPTQ9NRN7 309 aa21■□□□□ 0.95
UPF1-207ENST00000599848 DNMT3LQ9UJW3 386 aa21■□□□□ 0.95
UPF1-207ENST00000599848 SCAF8Q9UPN6 1271 aaKnown RBP21■□□□□ 0.95
UPF1-207ENST00000599848 NFIBO00712 420 aa21■□□□□ 0.95
UPF1-207ENST00000599848 LGALS2P05162 132 aa21■□□□□ 0.95
UPF1-207ENST00000599848 IFNGR2P38484 337 aa21■□□□□ 0.95
UPF1-207ENST00000599848 CTCFP49711 727 aaPredicted RBP21■□□□□ 0.95
UPF1-207ENST00000599848 NOMO2Q5JPE7 1267 aa21■□□□□ 0.95
UPF1-207ENST00000599848 LUZP2Q86TE4 346 aa21■□□□□ 0.95
UPF1-207ENST00000599848 CBWD2Q8IUF1 395 aa21■□□□□ 0.95
UPF1-207ENST00000599848 EME1Q96AY2 570 aa21■□□□□ 0.95
UPF1-207ENST00000599848 VCPIP1Q96JH7 1222 aa21■□□□□ 0.95
UPF1-207ENST00000599848 PNMA8BQ9ULN7 279 aaPredicted RBP21■□□□□ 0.95
UPF1-207ENST00000599848 OR6A2O95222 327 aa21■□□□□ 0.95
UPF1-207ENST00000599848 DEPDC7Q96QD5 511 aa21■□□□□ 0.95
UPF1-207ENST00000599848 ZSWIM1Q9BR11 485 aa21■□□□□ 0.95
UPF1-207ENST00000599848 SOHLH2Q9NX45 425 aa21■□□□□ 0.95
UPF1-207ENST00000599848 BTKQ06187 659 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 GRM3Q14832 879 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 LY6KQ17RY6 165 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 MOSPD2Q8NHP6 518 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 CHORDC1Q9UHD1 332 aaPredicted RBP20.99■□□□□ 0.95
UPF1-207ENST00000599848 REREQ9P2R6 1566 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 TEX28O15482 410 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 CXCL8P10145 99 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 CCT8P50990 548 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 CPA6Q8N4T0 437 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 C9orf72Q96LT7 481 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 ERP44Q9BS26 406 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 ZBTB14O43829 449 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 ENO1P06733 434 aaKnown RBP20.99■□□□□ 0.95
UPF1-207ENST00000599848 PSMA4P25789 261 aaKnown RBP20.99■□□□□ 0.95
UPF1-207ENST00000599848 ITGA8P53708 1063 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 POLE2P56282 527 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 SLC39A12Q504Y0 691 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 FAM163AQ96GL9 167 aaPredicted RBP20.99■□□□□ 0.95
UPF1-207ENST00000599848 NCKIPSDQ9NZQ3 722 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 HPS5Q9UPZ3 1129 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 DDTLA6NHG4 134 aaPredicted RBP20.99■□□□□ 0.95
UPF1-207ENST00000599848 H0Y3Z8 333 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 ITGAXP20702 1163 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 TRIM71Q2Q1W2 868 aaKnown RBP20.99■□□□□ 0.95
UPF1-207ENST00000599848 LYPLAL1Q5VWZ2 237 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 BRSK2Q8IWQ3 736 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 CENPLQ8N0S6 344 aaPredicted RBP20.99■□□□□ 0.95
UPF1-207ENST00000599848 ASB2Q96Q27 587 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 ABCG4Q9H172 646 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 MLXIPLQ9NP71 852 aa20.99■□□□□ 0.95
UPF1-207ENST00000599848 CYP1A1P04798 512 aaPredicted RBP20.98■□□□□ 0.95
UPF1-207ENST00000599848 CES1P23141 567 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 TUBP50607 506 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 BBS4Q96RK4 519 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 TAS2R13Q9NYV9 303 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 TNS2Q63HR2 1409 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 CHRNB3Q05901 458 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 SYCP2LQ5T4T6 812 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 SERPINA13PQ6UXR4 307 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 HJURPQ8NCD3 748 aaPredicted RBP20.98■□□□□ 0.95
UPF1-207ENST00000599848 C18orf25Q96B23 403 aaPredicted RBP20.98■□□□□ 0.95
UPF1-207ENST00000599848 TMEM134Q9H6X4 195 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 GPAMQ9HCL2 828 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 ZDHHC4Q9NPG8 344 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 TRPC4Q9UBN4 977 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 TNFSF13BQ9Y275 285 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 ESYT3A0FGR9 886 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 OR6C75A6NL08 312 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.98■□□□□ 0.95
UPF1-207ENST00000599848 FAM220BPB1ANY3 271 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 DAB1O75553 588 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 ENO2P09104 434 aaPredicted RBP20.98■□□□□ 0.95
UPF1-207ENST00000599848 SULT2A1Q06520 285 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 MMRN1Q13201 1228 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 ZNF720Q7Z2F6 126 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 FAM131BQ86XD5 332 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 KLHL3Q9UH77 587 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 ACSL4O60488 711 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 VPS4BO75351 444 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 RXFP2Q8WXD0 754 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 EXOSC4Q9NPD3 245 aaKnown RBP20.98■□□□□ 0.95
UPF1-207ENST00000599848 SMPD4Q9NXE4 827 aa20.98■□□□□ 0.95
UPF1-207ENST00000599848 CEP170BQ9Y4F5 1589 aaPredicted RBP20.98■□□□□ 0.95
UPF1-207ENST00000599848 ENDOD1O94919 500 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 PTPRAP18433 802 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 MYL6P60660 151 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 KDSRQ06136 332 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 NMRAL1Q9HBL8 299 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 MARCH2Q9P0N8 246 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 GLUD1P00367 558 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 GRK2P25098 689 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 VGLL4Q14135 290 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 NCF4Q15080 339 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 RASGRP2Q7LDG7 609 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 SCAIQ8N9R8 606 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 CCT7Q99832 543 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 VIPAS39Q9H9C1 493 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 QRICH2Q9H0J4 1663 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 LOC102724159A0A0B4J2E5 919 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 TRIM49D1C9J1S8 452 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms