RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TMEM134Q9H6X4 195 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 PNPOQ9NVS9 261 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 BTBD7Q9P203 1132 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 WDR35Q9P2L0 1181 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 AP1B1Q10567 949 aa15.77■□□□□ 0.11
UPF1-204ENST00000596842 FBXO16Q8IX29 292 aaPredicted RBP15.77■□□□□ 0.11
UPF1-204ENST00000596842 RNPEPQ9H4A4 650 aa15.77■□□□□ 0.11
UPF1-204ENST00000596842 POPDC2Q9HBU9 364 aa15.77■□□□□ 0.11
UPF1-204ENST00000596842 SSU72Q9NP77 194 aaKnown RBP15.77■□□□□ 0.11
UPF1-204ENST00000596842 PGAP2Q9UHJ9 254 aa15.77■□□□□ 0.11
UPF1-204ENST00000596842 SLC15A5A6NIM6 579 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 MAFO75444 373 aaPredicted RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 RFPL1O75677 317 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 PIGRP01833 764 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 ZNF143P52747 638 aaPredicted RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 RABGAP1LQ5R372 815 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 TMCO4Q5TGY1 634 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 HEATR6Q6AI08 1181 aaKnown RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 UBR7Q8N806 425 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 CLEC4CQ8WTT0 213 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 NDRG1Q92597 394 aaKnown RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 LGMNQ99538 433 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 HOXC10Q9NYD6 342 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 LMCD1Q9NZU5 365 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 A0A087WZ62 844 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 GOLGA8QA0A0J9YX86 632 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 GOLGA8OA6NCC3 632 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 E9PBE3 544 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 GOLGA8NF8WBI6 632 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 LIN7AO14910 233 aaPredicted RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 CFLARO15519 480 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 KLHL41O60662 606 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 DGKIO75912 1065 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 CYP2F1P24903 491 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 GPD2P43304 727 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 SLC18A2Q05940 514 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 IER5Q5VY09 327 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 KCNT2Q6UVM3 1135 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 CHSY1Q86X52 802 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 RNF148Q8N7C7 305 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 OR6B3Q8NGW1 331 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 FDXACB1Q9BRP7 624 aaPredicted RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 UNKQ9C0B0 810 aaKnown RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 TLE6Q9H808 572 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 KCNK4Q9NYG8 393 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 HBS1LQ9Y450 684 aaKnown RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 ARIH2O95376 493 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 MLH1P40692 756 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 PGGT1BP53609 377 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 ROR2Q01974 943 aaKnown RBP15.76■□□□□ 0.11
UPF1-204ENST00000596842 DSG1Q02413 1049 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 RAPH1Q70E73 1250 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 FAM131BQ86XD5 332 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 USP29Q9HBJ7 922 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 CEP350Q5VT06 3117 aa15.76■□□□□ 0.11
UPF1-204ENST00000596842 GOLGA8TH3BQL2 631 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 TPP1O14773 563 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 TYK2P29597 1187 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 HSF5Q4G112 596 aaPredicted RBP15.75■□□□□ 0.11
UPF1-204ENST00000596842 TREML2Q5T2D2 321 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 CWF19L1Q69YN2 538 aaKnown RBP15.75■□□□□ 0.11
UPF1-204ENST00000596842 PMF1Q6P1K2 205 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 CMC1Q7Z7K0 106 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 PYROXD2Q8N2H3 581 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 PPP4R1Q8TF05 950 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 TUBGCP5Q96RT8 1024 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 ARHGEF4Q9NR80 690 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 GALNT8Q9NY28 637 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 RPS6KL1Q9Y6S9 549 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 THSD7AQ9UPZ6 1657 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 PLSCR1O15162 318 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 IQCF3P0C7M6 154 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 DHRS4L1P0CG22 281 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 PTPN7P35236 360 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 ITGA9Q13797 1035 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 SURF1Q15526 300 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 TRIP10Q15642 601 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 FAM47CQ5HY64 1035 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 VCX3BQ9H321 246 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 PCDH18Q9HCL0 1135 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 VCX3AQ9NNX9 186 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 MAGEA13PA6NCF6 341 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 CHADO15335 359 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 ATG7O95352 703 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 ERVK-10P10266 1014 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 GHRHRQ02643 423 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 MXD4Q14582 209 aaPredicted RBP15.75■□□□□ 0.11
UPF1-204ENST00000596842 CCDC142Q17RM4 750 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 PPP1R26Q5T8A7 1209 aaPredicted RBP15.75■□□□□ 0.11
UPF1-204ENST00000596842 KIF12Q96FN5 646 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 ANKRD27Q96NW4 1050 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 GORASP1Q9BQQ3 440 aa15.75■□□□□ 0.11
UPF1-204ENST00000596842 LTBP4Q8N2S1 1624 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 DCXO43602 365 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 CCDC14Q49A88 953 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 MFN1Q8IWA4 741 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 DEFB107AQ8IZN7 70 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 REPS2Q8NFH8 660 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 ATP2A3Q93084 1043 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 APOL2Q9BQE5 337 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms