RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 FMNL3Q8IVF7 1028 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 PPM1KQ8N3J5 372 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 CCDC150Q8NCX0 1101 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 NT5C1BQ96P26 610 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 GBP4Q96PP9 640 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 GABRG3Q99928 467 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 RTKNQ9BST9 563 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 CRACR2AQ9BSW2 395 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 FAM124BQ9H5Z6 455 aaPredicted RBP10.97□□□□□ -0.65
LIG1-213ENST00000596672 METTL14Q9HCE5 456 aaKnown RBP10.97□□□□□ -0.65
LIG1-213ENST00000596672 SIX2Q9NPC8 291 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 CALCOCO1Q9P1Z2 691 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 KIAA1468Q9P260 1216 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 CDV3Q9UKY7 258 aaKnown RBP10.97□□□□□ -0.65
LIG1-213ENST00000596672 DOCK9Q9BZ29 2069 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 LNP1A1A4G5 178 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.96□□□□□ -0.65
LIG1-213ENST00000596672 GIPC1O14908 333 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 CAVIN2O95810 425 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 IGLV3-27P01718 113 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 PAEPP09466 180 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 RALAP11233 206 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 HOXD9P28356 352 aaPredicted RBP10.96□□□□□ -0.65
LIG1-213ENST00000596672 NTSR1P30989 418 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 SLC6A4P31645 630 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 GBP1P32455 592 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 IL12RB1P42701 662 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 GPD2P43304 727 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 DGKGP49619 791 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 PSEN1P49768 467 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 PAK1Q13153 545 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 USP39Q53GS9 565 aaKnown RBP10.96□□□□□ -0.65
LIG1-213ENST00000596672 FAM133BQ5BKY9 247 aaKnown RBP10.96□□□□□ -0.65
LIG1-213ENST00000596672 EOGTQ5NDL2 527 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 BTBD8Q5XKL5 378 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 RNF43Q68DV7 783 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 NADSYN1Q6IA69 706 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 ARMCX6Q7L4S7 300 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 SLC41A1Q8IVJ1 513 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 SCML4Q8N228 414 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 TTC39CQ8N584 583 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 WDTC1Q8N5D0 677 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 IPO4Q8TEX9 1081 aaKnown RBP10.96□□□□□ -0.65
LIG1-213ENST00000596672 LMLNQ96KR4 655 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 WDR35Q9P2L0 1181 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 STOML2Q9UJZ1 356 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 LSM7Q9UK45 103 aaKnown RBP10.96□□□□□ -0.65
LIG1-213ENST00000596672 SLC27A6Q9Y2P4 619 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 PCDHGA5Q9Y5G8 931 aa10.96□□□□□ -0.65
LIG1-213ENST00000596672 CFAP47Q6ZTR5 3102 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 ATXN2Q99700 1313 aaKnown RBP10.95□□□□□ -0.66
LIG1-213ENST00000596672 IGHV1OR15-9A0A0B4J2B8 117 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 KCNJ18B7U540 433 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 P4HA2O15460 535 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 HOXB2P14652 356 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 ITPKAP23677 461 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 TBXAS1P24557 533 aaPredicted RBP10.95□□□□□ -0.66
LIG1-213ENST00000596672 PRKCHP24723 683 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 HLA-FP30511 346 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 LIMK1P53667 647 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 COG7P83436 770 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 GCNT1Q02742 428 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 TAF5Q15542 800 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 HSF5Q4G112 596 aaPredicted RBP10.95□□□□□ -0.66
LIG1-213ENST00000596672 PPM1JQ5JR12 505 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 SYPL2Q5VXT5 272 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 MSANTD2Q6P1R3 559 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 RFWD3Q6PCD5 774 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 SCUBE3Q8IX30 993 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 CPXM2Q8N436 756 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 EXOC4Q96A65 974 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 CCDC34Q96HJ3 373 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 MRGPRX1Q96LB2 322 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 MKRN2Q9H000 416 aaKnown RBP10.95□□□□□ -0.66
LIG1-213ENST00000596672 LRRC4Q9HBW1 653 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 VPS45Q9NRW7 570 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 THAP10Q9P2Z0 257 aaPredicted RBP10.95□□□□□ -0.66
LIG1-213ENST00000596672 XPO7Q9UIA9 1087 aaKnown RBP10.95□□□□□ -0.66
LIG1-213ENST00000596672 NAALADL1Q9UQQ1 740 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 SLCO1B1Q9Y6L6 691 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 STON1Q9Y6Q2 735 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 WDFY3Q8IZQ1 3526 aa10.95□□□□□ -0.66
LIG1-213ENST00000596672 C4orf47A7E2U8 309 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 M0QYV0 167 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 PAPSS1O43252 624 aaPredicted RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 RHOBTB1O94844 696 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 AFPP02771 609 aaKnown RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 PNMA6AP0CW24 399 aaPredicted RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 SETSIPP0DME0 302 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 DHPSP49366 369 aaPredicted RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 COPAP53621 1224 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 STIM1Q13586 685 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 PTPRNQ16849 979 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 FUT11Q495W5 492 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 AASDHQ4L235 1098 aaPredicted RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 N4BP2L1Q5TBK1 243 aaPredicted RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 CLEC17AQ6ZS10 378 aa10.94□□□□□ -0.66
LIG1-213ENST00000596672 RSRC2Q7L4I2 434 aaKnown RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 KIAA0907Q7Z7F0 614 aaPredicted RBP10.94□□□□□ -0.66
LIG1-213ENST00000596672 ADIPOR2Q86V24 386 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms