RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 LRRC39Q96DD0 335 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 NSRP1Q9H0G5 558 aaKnown RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 DMAP1Q9NPF5 467 aaPredicted RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 PPANQ9NQ55 473 aaKnown RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 STARD7Q9NQZ5 370 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 EURLQ9NYK6 297 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 RSPH14Q9UHP6 348 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 NAALADL1Q9UQQ1 740 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 INPP5FQ9Y2H2 1132 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 TIMM13Q9Y5L4 95 aaPredicted RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 USP3Q9Y6I4 520 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 NLRC5Q86WI3 1866 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 ATXN2Q99700 1313 aaKnown RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 COL4A4P53420 1690 aaPredicted RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 HHLA1C9JL84 531 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 KBTBD13C9JR72 458 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 ARVCFO00192 962 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 SOX1O00570 391 aaPredicted RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 PPP1R12AO14974 1030 aaPredicted RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 TMEM63AO94886 807 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 INHAP05111 366 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 TPSB2P20231 275 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 CYP2C18P33260 490 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 CCT5P48643 541 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 ATXN1P54253 815 aaKnown RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 SARNPP82979 210 aaKnown RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 BFSP2Q13515 415 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 PDK1Q15118 436 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 TPSAB1Q15661 275 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 BBS9Q3SYG4 887 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 OTUD1Q5VV17 481 aaPredicted RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 NCBP2-AS2Q69YL0 99 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 PM20D1Q6GTS8 502 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 CD300LGQ6UXG3 332 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 ARHGEF18Q6ZSZ5 1173 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 CCDC13Q8IYE1 715 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 DCP1BQ8IZD4 617 aaKnown RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 SLC7A14Q8TBB6 771 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 RNF139Q8WU17 664 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 TFB1MQ8WVM0 346 aaKnown RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 LRCH3Q96II8 777 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 RTP3Q9BQQ7 232 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 HTATIP2Q9BUP3 242 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 BRD8Q9H0E9 1235 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 ELAC1Q9H777 363 aaKnown RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 C10orf88Q9H8K7 445 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 RAB6BQ9NRW1 208 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 ETNK2Q9NVF9 386 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 NKIRAS1Q9NYS0 192 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 PSMC3IPQ9P2W1 217 aaPredicted RBP11.66□□□□□ -0.54
LIG3-204ENST00000585740 PHF24Q9UPV7 400 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 LAMA3Q16787 3333 aa11.66□□□□□ -0.54
LIG3-204ENST00000585740 A0A1W2PQ45 241 aaPredicted RBP11.65□□□□□ -0.54
LIG3-204ENST00000585740 A0A1W2PQY0 241 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 EEF2KO00418 725 aaKnown RBP11.65□□□□□ -0.54
LIG3-204ENST00000585740 NRP1O14786 923 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 DGKIO75912 1065 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 NCAM1P13591 858 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 BRAFP15056 766 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 GOT1P17174 413 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 AMPD1P23109 780 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 ADRA1BP35368 520 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 BRCC3P46736 316 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 NDUFV1P49821 464 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 SLC18A1P54219 525 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 GEMIN4P57678 1058 aaKnown RBP11.65□□□□□ -0.54
LIG3-204ENST00000585740 CDK16Q00536 496 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 GBE1Q04446 702 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 PAFAH1B3Q15102 231 aaKnown RBP11.65□□□□□ -0.54
LIG3-204ENST00000585740 TMED2Q15363 201 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 NOMO2Q5JPE7 1267 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 FNBP1LQ5T0N5 605 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 TRAF7Q6Q0C0 670 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 KCNT2Q6UVM3 1135 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 VPS52Q8N1B4 723 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 FBXO36Q8NEA4 188 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 ATXN2LQ8WWM7 1075 aaKnown RBP11.65□□□□□ -0.54
LIG3-204ENST00000585740 MAML1Q92585 1016 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 CHMP6Q96FZ7 201 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 OLFM3Q96PB7 478 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 FAM193BQ96PV7 902 aaPredicted RBP11.65□□□□□ -0.54
LIG3-204ENST00000585740 PKMYT1Q99640 499 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 PAAF1Q9BRP4 392 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 ADAM33Q9BZ11 813 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 ACSS3Q9H6R3 686 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 ARHGEF4Q9NR80 690 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 CACNG4Q9UBN1 327 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 FBXW11Q9UKB1 542 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 SMG5Q9UPR3 1016 aaKnown RBP11.65□□□□□ -0.54
LIG3-204ENST00000585740 NR2E3Q9Y5X4 410 aa11.65□□□□□ -0.54
LIG3-204ENST00000585740 ZNF638Q14966 1978 aaKnown RBP11.65□□□□□ -0.55
LIG3-204ENST00000585740 CLUHO75153 1309 aa11.64□□□□□ -0.55
LIG3-204ENST00000585740 YJEFN3A6XGL0 299 aa11.64□□□□□ -0.55
LIG3-204ENST00000585740 E7ENQ6 273 aa11.64□□□□□ -0.55
LIG3-204ENST00000585740 POC1B-GALNT4F8VUJ3 575 aa11.64□□□□□ -0.55
LIG3-204ENST00000585740 GOLGA8MH3BSY2 632 aa11.64□□□□□ -0.55
LIG3-204ENST00000585740 NCAM2O15394 837 aa11.64□□□□□ -0.55
LIG3-204ENST00000585740 OPHN1O60890 802 aa11.64□□□□□ -0.55
LIG3-204ENST00000585740 FYNP06241 537 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms