RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 RANBP10Q6VN20 620 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 ZNF66Q6ZN08 573 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 NRSN1Q8IZ57 195 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 DDB2Q92466 427 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 C5orf34Q96MH7 638 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 ABHD10Q9NUJ1 306 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 LRFN1Q9P244 771 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 SCAF8Q9UPN6 1271 aaKnown RBP5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 CCDC187A0A096LP49 1063 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 M0QZQ0 153 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 FCHO1O14526 889 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 CER1O95813 267 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 KLRK1P26718 216 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 DUSP1P28562 367 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 MPGP29372 298 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 WDR5P61964 334 aaKnown RBP5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 SRSF4Q08170 494 aaKnown RBP5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 GALNT1Q10472 559 aaPredicted RBP5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 SLC14A1Q13336 389 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 CCDC38Q502W7 563 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 ACSM6Q6P461 480 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 C8orf58Q8NAV2 365 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 OR52L2PQ8NGH6 319 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 SLC22A17Q8WUG5 538 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 HIC2Q96JB3 615 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 EFHD1Q9BUP0 239 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 TP63Q9H3D4 680 aaPredicted RBP5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 ADARB2Q9NS39 739 aaKnown RBP5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 DACT1Q9NYF0 836 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 MAFFQ9ULX9 164 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 PCDHB7Q9Y5E2 793 aa5.24□□□□□ -1.57
SMCHD1-204ENST00000581226 SPATA31A1Q5TZJ5 1347 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 TTC34A8MYJ7 566 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 SYT5O00445 386 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 RNF8O76064 485 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 LATS1O95835 1130 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 CSTBP04080 98 aaKnown RBP5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 SLC3A2P08195 630 aaKnown RBP5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 C21orf58P58505 322 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 MRPS21P82921 87 aaKnown RBP5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 BLMHQ13867 455 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 CBFBQ13951 182 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 CNGA3Q16281 694 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 PFKFB3Q16875 520 aaPredicted RBP5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 PNISRQ8TF01 805 aaKnown RBP5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 RMDN3Q96TC7 470 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 PAAF1Q9BRP4 392 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 KATNAL1Q9BW62 490 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 FLRT1Q9NZU1 646 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 SEMA5BQ9P283 1151 aa5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 UBE2J1Q9Y385 318 aaPredicted RBP5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 HEMK1Q9Y5R4 338 aaPredicted RBP5.23□□□□□ -1.57
SMCHD1-204ENST00000581226 TRIM38O00635 465 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 PPP6CO00743 305 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 TUBB4AP04350 444 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 ITGA2BP08514 1039 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 MATN1P21941 496 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 FBLP22087 321 aaKnown RBP5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 CERS1P27544 350 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 SERPINF1P36955 418 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 FOXF2Q12947 444 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 KPNB1Q14974 876 aaKnown RBP5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 KRT72Q14CN4 511 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 CEP78Q5JTW2 689 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 KIAA1614Q5VZ46 1190 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 MIS18BP1Q6P0N0 1132 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 CCDC174Q6PII3 467 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 C16orf89Q6UX73 402 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 ZNF813Q6ZN06 617 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 TRABD2AQ86V40 505 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 ZNF575Q86XF7 245 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 GLMPQ8WWB7 406 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 AKAP1Q92667 903 aaKnown RBP eCLIP5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 EID2BQ96D98 161 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 MCRS1Q96EZ8 462 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 LTV1Q96GA3 475 aaPredicted RBP5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 ARPC5LQ9BPX5 153 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 SH2D3AQ9BRG2 576 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 SEMA4CQ9C0C4 833 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 NUAK2Q9H093 628 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 PDGFCQ9NRA1 345 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 ARL8BQ9NVJ2 186 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 FRMD4BQ9Y2L6 1034 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 WDR17Q8IZU2 1322 aa5.22□□□□□ -1.57
SMCHD1-204ENST00000581226 GXYLT2A0PJZ3 443 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 RPP40O75818 363 aaKnown RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 CELA2AP08217 269 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 GYS1P13807 737 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 TRAPPC10P48553 1259 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 VPS41P49754 854 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 AGTR2P50052 363 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 GAB1Q13480 694 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 ZNF268Q14587 947 aaPredicted RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 CCDC142Q17RM4 750 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 BTBD16Q32M84 506 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 ZNF569Q5MCW4 686 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 ATPAF1Q5TC12 328 aaPredicted RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 ANKRD40Q6AI12 368 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 KYAT3Q6YP21 454 aaKnown RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 OR1N1Q8NGS0 311 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms