RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CCDC68Q9H2F9 335 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 PCDH9Q9HC56 1237 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 ADA2Q9NZK5 511 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 ITGB1BP2Q9UKP3 347 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 STRIP2Q9ULQ0 834 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 KAT6AQ92794 2004 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 DENND3A2RUS2 1198 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 LYPLA1O75608 230 aaPredicted RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 MTA2O94776 668 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 EDN1P05305 212 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 DSG3P32926 999 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 CD97P48960 835 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 PKNOX1P55347 436 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 SOX10P56693 466 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 NOL9Q5SY16 702 aaKnown RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 PADI6Q6TGC4 694 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 UGT2A3Q6UWM9 527 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 CATSPERGQ6ZRH7 1159 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 ZNF786Q8N393 782 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 DEPDC1BQ8WUY9 529 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 GID8Q9NWU2 228 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 ZC3H7BQ9UGR2 993 aaKnown RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 IP6K2Q9UHH9 426 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 NOCTQ9UK39 431 aaKnown RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 TMA7Q9Y2S6 64 aaKnown RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 GJA3Q9Y6H8 435 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 LAMA2P24043 3122 aaKnown RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 A0A088AWK7 358 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 BUD23O43709 281 aaKnown RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 HSPA4LO95757 839 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 CDH3P22223 829 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 FGFR3P22607 806 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 GTF2H1P32780 548 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 WNT7BP56706 349 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 GPX6P59796 221 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 FNBP1LQ5T0N5 605 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 FAM182AQ5T1J6 154 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 ANKRD22Q5VYY1 191 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 SLC26A11Q86WA9 606 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 ALLCQ8N6M5 410 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 ZNF280CQ8ND82 737 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 TMA16Q96EY4 203 aaKnown RBP9.88□□□□□ -0.83
CCDC40-212ENST00000574799 OSBPL6Q9BZF3 934 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 SEMA6AQ9H2E6 1030 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 FAIMQ9NVQ4 179 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 PCSK1NQ9UHG2 260 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 PSMD13Q9UNM6 376 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 EXOC7Q9UPT5 735 aa9.88□□□□□ -0.83
CCDC40-212ENST00000574799 KCNA4P22459 653 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 SLC5A2P31639 672 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 MTMR1Q13613 665 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 ZNF394Q53GI3 561 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 FAXCQ5TGI0 409 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 PLA2G4FQ68DD2 849 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 POTEHQ6S545 545 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 KYAT3Q6YP21 454 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 CHSY1Q86X52 802 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 SHKBP1Q8TBC3 707 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 FAM84AQ96KN4 292 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 MCEEQ96PE7 176 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 IMPG2Q9BZV3 1241 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 KLHL25Q9H0H3 589 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 NRDE2Q9H7Z3 1164 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 SSU72Q9NP77 194 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 GGA3Q9NZ52 723 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 PLXNB2O15031 1838 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 FBP2O00757 339 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 SPTLC1O15269 473 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 CNMDO75829 334 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 EEF1B2P24534 225 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 KLRC2P26717 231 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 PPARGP37231 505 aaPredicted RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 HSPA13P48723 471 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 EIF3EP60228 445 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 PLOD1Q02809 727 aaPredicted RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 BAATQ14032 418 aaPredicted RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 SNRNP35Q16560 246 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 ZNF568Q3ZCX4 644 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 PDCD4Q53EL6 469 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 KCNT1Q5JUK3 1230 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 RNASEH2BQ5TBB1 312 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 PPP1R2P3Q6NXS1 205 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 C16orf46Q6P387 395 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 DPH6Q7L8W6 267 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 RSPH1Q8WYR4 309 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 RMND5BQ96G75 393 aaPredicted RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 CDRT15Q96T59 188 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 TEKT3Q9BXF9 490 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 EIF2AQ9BY44 585 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 IVNS1ABPQ9Y6Y0 642 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 TCRBV9S1A1TA0A576 114 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 GMNNO75496 209 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 CSPG5O95196 566 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 S100BP04271 92 aaPredicted RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 MAP4P27816 1152 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 ITGA7Q13683 1181 aa9.87□□□□□ -0.83
CCDC40-212ENST00000574799 HADHQ16836 314 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 FASTKD1Q53R41 847 aaKnown RBP9.87□□□□□ -0.83
CCDC40-212ENST00000574799 SPOCD1Q6ZMY3 1216 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms