RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GNPTGQ9UJJ9 305 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 ADAMTS6Q9UKP5 1117 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 NOSIPQ9Y314 301 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 BRCA1P38398 1863 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 TRIM64A6NGJ6 449 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 TRIM64BA6NI03 449 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 LRRC72A6NJI9 287 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 hCG_2039718K7EN88 272 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 ZBTB39O15060 712 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 USP12O75317 370 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 NELFEP18615 380 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 BMXP51813 675 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 SMARCB1Q12824 385 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 ABCB5Q2M3G0 1257 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 FAM205BPQ63HN1 556 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 RWDD4Q6NW29 188 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 BORAQ6PGQ7 559 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 CYP20A1Q6UW02 462 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 B3GNT9Q6UX72 402 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 KBTBD7Q8WVZ9 684 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 PRR11Q96HE9 360 aaPredicted RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 IGSF9Q9P2J2 1179 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 CPSF3Q9UKF6 684 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 PRR12Q9ULL5 1215 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 WDR81Q562E7 1941 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 RPTORQ8N122 1335 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 CASQ2O14958 399 aaPredicted RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 AP1G1O43747 822 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ENTPD3O75355 529 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 CYP3A4P08684 503 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 FAM58BPP0C7Q3 252 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 MYBPC1Q00872 1141 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 HP1BP3Q5SSJ5 553 aaPredicted RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 PRUNE1Q86TP1 453 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 METTL13Q8N6R0 699 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 GSTCDQ8NEC7 633 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 CDK5RAP1Q96SZ6 601 aaKnown RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 RBM15Q96T37 977 aaKnown RBP eCLIP11.17□□□□□ -0.622e-6■■■■□ 25.7
CLK3-226ENST00000569406 CNOT7Q9UIV1 285 aaKnown RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 AJAP1Q9UKB5 411 aaPredicted RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 ERGIC3Q9Y282 383 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 RLFQ13129 1914 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 PFASO15067 1338 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 SPDYE2BA6NHP3 402 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 G3V3G9 751 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 MEIS1O00470 390 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 GSTM1P09488 218 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 SPDYE6P0CI01 402 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ABCB4P21439 1286 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 GJC1P36383 396 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 PTPN5P54829 565 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ACTR3P61158 418 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 KDSRQ06136 332 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 AP3B2Q13367 1082 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 FAM26FQ5R3K3 315 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ZNF618Q5T7W0 954 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 DCAF8Q5TAQ9 597 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 METTL3Q86U44 580 aaKnown RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 CCDC124Q96CT7 223 aaKnown RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 HSD17B14Q9BPX1 270 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 TUBB6Q9BUF5 446 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 GLIS2Q9BZE0 524 aaPredicted RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 RAB34Q9BZG1 259 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 GANQ9H2C0 597 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ADNPQ9H2P0 1102 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 CORINQ9Y5Q5 1042 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ST14Q9Y5Y6 855 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 PEX1O43933 1283 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 NDUFS2O75306 463 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 FKBP6O75344 327 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 RNASEH2AO75792 299 aaKnown RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 GALNT1Q10472 559 aaPredicted RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 PRR16Q569H4 304 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 SDE2Q6IQ49 451 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 TSPAN14Q8NG11 270 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 FEM1CQ96JP0 617 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 REEP2Q9BRK0 252 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 RUSC1Q9BVN2 902 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ACAT2Q9BWD1 397 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 MRPL40Q9NQ50 206 aaKnown RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 KCTD5Q9NXV2 234 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 RGS17Q9UGC6 210 aaPredicted RBP11.17□□□□□ -0.62
CLK3-226ENST00000569406 GJA3Q9Y6H8 435 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 SQORQ9Y6N5 450 aa11.17□□□□□ -0.62
CLK3-226ENST00000569406 ATP2A1O14983 1001 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 PJA2O43164 708 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 HOXC11O43248 304 aaPredicted RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 IDH3BO43837 385 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 FGGP02679 453 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 ENO1P06733 434 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 ZBTB48P10074 688 aaPredicted RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 SPCS2Q15005 226 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 PPM1KQ8N3J5 372 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 SLC15A4Q8N697 577 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 CAMKK2Q96RR4 588 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 ZSCAN5AQ9BUG6 496 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 AMNQ9BXJ7 453 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 SLC7A8Q9UHI5 535 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 ATP6V1HQ9UI12 483 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 NENFQ9UMX5 172 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms