RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RCOR3Q9P2K3 495 aaPredicted RBP20.99■□□□□ 0.95
CLN3-230ENST00000568076 TTLL3Q9Y4R7 772 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 TSC2P49815 1807 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 SEPT4O43236 478 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 CA12O43570 354 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 MFSD11O43934 449 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 AP1G2O75843 785 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 GHRP10912 638 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 CD52P31358 61 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 SCTRP47872 440 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 FCGRTP55899 365 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 NKX3-2P78367 333 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 SPARCL1Q14515 664 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 CTU1Q7Z7A3 348 aaKnown RBP20.99■□□□□ 0.95
CLN3-230ENST00000568076 VPS52Q8N1B4 723 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 MCUQ8NE86 351 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 RNF139Q8WU17 664 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 SLC44A1Q8WWI5 657 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 CFAP36Q96G28 342 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 PNPLA8Q9NP80 782 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 ABCF3Q9NUQ8 709 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 YJEFN3A6XGL0 299 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 E7ENQ6 273 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 GPR182O15218 404 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 TOMM70O94826 608 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 THPOP40225 353 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 MAGEA3P43357 314 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 DAOAP59103 153 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 NME3Q13232 169 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 MTFR1Q15390 333 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 UPP1Q16831 310 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 FBXW10Q5XX13 1052 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 C4orf22Q6V702 233 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 TRPM8Q7Z2W7 1104 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 SPATA21Q7Z572 469 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 LGMNQ99538 433 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 SPC25Q9HBM1 224 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 PRKAG3Q9UGI9 489 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 PADI3Q9ULW8 664 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 STAP1Q9ULZ2 295 aa20.98■□□□□ 0.95
CLN3-230ENST00000568076 SPAG6O75602 509 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 ASGR1P07306 291 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 TM4SF4P48230 202 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 CAP1Q01518 475 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 DEUP1Q05D60 604 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 CACNB2Q08289 660 aaPredicted RBP20.97■□□□□ 0.95
CLN3-230ENST00000568076 TIGD5Q53EQ6 642 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 HEATR6Q6AI08 1181 aaKnown RBP20.97■□□□□ 0.95
CLN3-230ENST00000568076 TFB1MQ8WVM0 346 aaKnown RBP20.97■□□□□ 0.95
CLN3-230ENST00000568076 KLF6Q99612 283 aaPredicted RBP20.97■□□□□ 0.95
CLN3-230ENST00000568076 RTP3Q9BQQ7 232 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 HHLA1C9JL84 531 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 PRKCZQ05513 592 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 PTK7Q13308 1070 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 TTC31Q49AM3 519 aaPredicted RBP20.97■□□□□ 0.95
CLN3-230ENST00000568076 RAB41Q5JT25 222 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 FAM47EQ6ZV65 393 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 ADAM32Q8TC27 787 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 HTR3CQ8WXA8 447 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 RHOBTB2Q9BYZ6 727 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 ANLNQ9NQW6 1124 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 ZC3H7BQ9UGR2 993 aaKnown RBP20.97■□□□□ 0.95
CLN3-230ENST00000568076 GGT7Q9UJ14 662 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 CDH9Q9ULB4 789 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 TLL2Q9Y6L7 1015 aa20.97■□□□□ 0.95
CLN3-230ENST00000568076 I3L4J1 428 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 I6L893 689 aaPredicted RBP20.96■□□□□ 0.95
CLN3-230ENST00000568076 GOLGA8RI6L899 631 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 SUN1O94901 812 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 FBXO21O94952 628 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 AMHP03971 560 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 TPSB2P20231 275 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 RPL9P32969 192 aaKnown RBP20.96■□□□□ 0.95
CLN3-230ENST00000568076 GRIA1P42261 906 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 FAAP100Q0VG06 881 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 DNAJC3Q13217 504 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 SEMA5AQ13591 1074 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 TPSAB1Q15661 275 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 KCNA10Q16322 511 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 PDK4Q16654 411 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 RGS9BPQ6ZS82 235 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 BANPQ8N9N5 519 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 TRIM56Q9BRZ2 755 aaKnown RBP20.96■□□□□ 0.95
CLN3-230ENST00000568076 WDR6Q9NNW5 1121 aaKnown RBP20.96■□□□□ 0.95
CLN3-230ENST00000568076 XPNPEP3Q9NQH7 507 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 HACD1B0YJ81 288 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 CREB3O43889 395 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 MYCNP04198 464 aaPredicted RBP20.96■□□□□ 0.95
CLN3-230ENST00000568076 USP17L7P0C7H9 530 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 DPYSQ14117 519 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 ANKRD20A2Q5SQ80 823 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 ANKRD20A1Q5TYW2 823 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 ANKRD20A3Q5VUR7 823 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 LVRNQ6Q4G3 990 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 DENND5BQ6ZUT9 1274 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 BHLHA9Q7RTU4 235 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 CNPY4Q8N129 248 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 MPP5Q8N3R9 675 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 SLC7A14Q8TBB6 771 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 SERAC1Q96JX3 654 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms