RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 GABRG2P18507 467 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 DAOAP59103 153 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 TRIP4Q15650 581 aaPredicted RBP23.49■■□□□ 1.35
CLN3-215ENST00000565236 MAP7D1Q3KQU3 841 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 STPG1Q5TH74 334 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 PMF1Q6P1K2 205 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 CPXM2Q8N436 756 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 FRMD1Q8N878 549 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 DDI1Q8WTU0 396 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 P2RY11Q96G91 374 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 ZSWIM1Q9BR11 485 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 INTS2Q9H0H0 1204 aaKnown RBP23.49■■□□□ 1.35
CLN3-215ENST00000565236 SFMBT1Q9UHJ3 866 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 A0A1W2PQF6 199 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 GFRA2O00451 464 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 PIK3R2O00459 728 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 PPM1JQ5JR12 505 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 CREBRFQ8IUR6 639 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 TMEFF1Q8IYR6 380 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 IPO4Q8TEX9 1081 aaKnown RBP23.48■■□□□ 1.35
CLN3-215ENST00000565236 IRGQQ8WZA9 623 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 GABRG3Q99928 467 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 CACNA2D2Q9NY47 1150 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 CHMP5Q9NZZ3 219 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 MBD1Q9UIS9 605 aaPredicted RBP23.48■■□□□ 1.35
CLN3-215ENST00000565236 RWDD2AQ9UIY3 292 aa23.48■■□□□ 1.35
CLN3-215ENST00000565236 KHNYNO15037 678 aaKnown RBP23.47■■□□□ 1.35
CLN3-215ENST00000565236 CALCAP01258 141 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 KRT5P13647 590 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 ZNF132P52740 706 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 MFAP3P55082 362 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 RNF43Q68DV7 783 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 UCMAQ8WVF2 138 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 PIGKQ92643 395 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 GOLGA1Q92805 767 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 ERLEC1Q96DZ1 483 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 HSFY1Q96LI6 401 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 KREMEN1Q96MU8 473 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 SLC2A11Q9BYW1 496 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 UBE2TQ9NPD8 197 aaPredicted RBP23.47■■□□□ 1.35
CLN3-215ENST00000565236 CALCOCO1Q9P1Z2 691 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 GON4LQ3T8J9 2241 aa23.47■■□□□ 1.35
CLN3-215ENST00000565236 CNOT1A5YKK6 2376 aaKnown RBP23.46■■□□□ 1.35
CLN3-215ENST00000565236 GABBR2O75899 941 aa23.46■■□□□ 1.35
CLN3-215ENST00000565236 GEN1Q17RS7 908 aa23.46■■□□□ 1.35
CLN3-215ENST00000565236 MPPE1Q53F39 396 aa23.46■■□□□ 1.35
CLN3-215ENST00000565236 SPDYCQ5MJ68 293 aa23.46■■□□□ 1.35
CLN3-215ENST00000565236 KIAA1211LQ6NV74 962 aa23.46■■□□□ 1.35
CLN3-215ENST00000565236 FAM217AQ8IXS0 508 aa23.46■■□□□ 1.35
CLN3-215ENST00000565236 EDEM2Q9BV94 578 aa23.46■■□□□ 1.35
CLN3-215ENST00000565236 WASH3PC4AMC7 463 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 NPC1O15118 1278 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 TSPAN3O60637 253 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 FBXO21O94952 628 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 KCNA4P22459 653 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 E2F5Q15329 346 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 SLC36A4Q6YBV0 504 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 ARMCX6Q7L4S7 300 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 PIWIL1Q96J94 861 aaKnown RBP23.45■■□□□ 1.34
CLN3-215ENST00000565236 CD248Q9HCU0 757 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 CNTN6Q9UQ52 1028 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 RAD54BQ9Y620 910 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 STON1Q9Y6Q2 735 aa23.45■■□□□ 1.34
CLN3-215ENST00000565236 TM4SF5O14894 197 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 AP5Z1O43299 807 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 MSI1O43347 362 aaKnown RBP23.44■■□□□ 1.34
CLN3-215ENST00000565236 ZNF217O75362 1048 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 LTFP02788 710 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 NDUFV2P19404 249 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 PTGER3P43115 390 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 ZNF445P59923 1031 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 STARD3Q14849 445 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 ADGRF1Q5T601 910 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 MSANTD2Q6P1R3 559 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 ANKS1BQ7Z6G8 1248 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 TMA16Q96EY4 203 aaKnown RBP23.44■■□□□ 1.34
CLN3-215ENST00000565236 MIS12Q9H081 205 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 ST7Q9NRC1 585 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 ELOVL2Q9NXB9 296 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 CLEC4EQ9ULY5 219 aa23.44■■□□□ 1.34
CLN3-215ENST00000565236 PLXND1Q9Y4D7 1925 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 LNP1A1A4G5 178 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 PATE3B3GLJ2 98 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 LATS1O95835 1130 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 RPL6Q02878 288 aaKnown RBP23.43■■□□□ 1.34
CLN3-215ENST00000565236 LYSMD4Q5XG99 296 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 ENOSF1Q7L5Y1 443 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 SYT12Q8IV01 421 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 UNC45BQ8IWX7 931 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 SCUBE3Q8IX30 993 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 CLEC4CQ8WTT0 213 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 CRACR2AQ9BSW2 395 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 THAP10Q9P2Z0 257 aaPredicted RBP23.43■■□□□ 1.34
CLN3-215ENST00000565236 STOML2Q9UJZ1 356 aa23.43■■□□□ 1.34
CLN3-215ENST00000565236 MED7O43513 233 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 TIMM44O43615 452 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 LETM1O95202 739 aaPredicted RBP23.42■■□□□ 1.34
CLN3-215ENST00000565236 DPP6P42658 865 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 GPD2P43304 727 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms