RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PCNX2A6NKB5 2137 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 SLC12A8A0AV02 714 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 CETN3O15182 167 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 CEACAM1P13688 526 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 CSRP1P21291 193 aaKnown RBP12.2□□□□□ -0.46
USP3-220ENST00000561381 MFAP3P55082 362 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 YWHAGP61981 247 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP3-220ENST00000561381 COG7P83436 770 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 GEN1Q17RS7 908 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 GOLGA7BQ2TAP0 167 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 DCAF17Q5H9S7 520 aaPredicted RBP12.2□□□□□ -0.46
USP3-220ENST00000561381 RAB41Q5JT25 222 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 TCERG1LQ5VWI1 586 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 ANKRD40Q6AI12 368 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 KIAA1324Q6UXG2 1013 aaKnown RBP12.2□□□□□ -0.46
USP3-220ENST00000561381 SLC36A4Q6YBV0 504 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 BHLHA9Q7RTU4 235 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 TADA2BQ86TJ2 420 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 DENND1CQ8IV53 801 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 TRIML1Q8N9V2 468 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 ANKRD52Q8NB46 1076 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 HSPA12BQ96MM6 686 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 GTPBP2Q9BX10 602 aaKnown RBP12.2□□□□□ -0.46
USP3-220ENST00000561381 ULBP1Q9BZM6 244 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 MARCH2Q9P0N8 246 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 WASF3Q9UPY6 502 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 ATP6V1DQ9Y5K8 247 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 STON1Q9Y6Q2 735 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 USP24Q9UPU5 2620 aa12.2□□□□□ -0.46
USP3-220ENST00000561381 TRIM49BA6NDI0 452 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 C1QTNF9BB2RNN3 333 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 ZBTB24O43167 697 aaPredicted RBP12.19□□□□□ -0.46
USP3-220ENST00000561381 ZNF217O75362 1048 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 C1QTNF9P0C862 333 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 IL12RB1P42701 662 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 TKTL1P51854 596 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 PDE4CQ08493 712 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 DUOXA1Q1HG43 343 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 FUT11Q495W5 492 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 RSRC2Q7L4I2 434 aaKnown RBP12.19□□□□□ -0.46
USP3-220ENST00000561381 FMR1NBQ8N0W7 255 aaPredicted RBP12.19□□□□□ -0.46
USP3-220ENST00000561381 SORCS1Q8WY21 1168 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 FAXDC2Q96IV6 333 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 CDK5RAP1Q96SZ6 601 aaKnown RBP12.19□□□□□ -0.46
USP3-220ENST00000561381 UBXN6Q9BZV1 441 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 DNAI2Q9GZS0 605 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 CAPN10Q9HC96 672 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 SLC6A14Q9UN76 642 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 ZNF510Q9Y2H8 683 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 SLC27A6Q9Y2P4 619 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 PCDH15Q96QU1 1955 aa12.19□□□□□ -0.46
USP3-220ENST00000561381 SPAARA0A1B0GVQ0 90 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 GFRA2O00451 464 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 STX10O60499 249 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 ZBED1O96006 694 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 SERPINF2P08697 491 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 MAOBP27338 520 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 HOXD12P35452 270 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 CHKAP35790 457 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 GFPT1Q06210 699 aaPredicted RBP12.18□□□□□ -0.46
USP3-220ENST00000561381 LRMPQ12912 555 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 SEMA3BQ13214 749 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 CUL2Q13617 745 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 ZNF658Q5TYW1 1059 aaPredicted RBP12.18□□□□□ -0.46
USP3-220ENST00000561381 PM20D1Q6GTS8 502 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 ZC3H3Q8IXZ2 948 aaKnown RBP12.18□□□□□ -0.46
USP3-220ENST00000561381 ARHGAP18Q8N392 663 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 TTC39CQ8N584 583 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 CEP76Q8TAP6 659 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 UBA3Q8TBC4 463 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 PIWIL1Q96J94 861 aaKnown RBP12.18□□□□□ -0.46
USP3-220ENST00000561381 DCLK3Q9C098 648 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 MKRN2Q9H000 416 aaKnown RBP12.18□□□□□ -0.46
USP3-220ENST00000561381 THAP10Q9P2Z0 257 aaPredicted RBP12.18□□□□□ -0.46
USP3-220ENST00000561381 SFMBT1Q9UHJ3 866 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 TSPAN16Q9UKR8 245 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 STRIP2Q9ULQ0 834 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 COQ4Q9Y3A0 265 aa12.18□□□□□ -0.46
USP3-220ENST00000561381 FRYQ5TBA9 3013 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 XPO1O14980 1071 aaKnown RBP12.17□□□□□ -0.46
USP3-220ENST00000561381 SLC16A3O15427 465 aaKnown RBP12.17□□□□□ -0.46
USP3-220ENST00000561381 NDUFS2O75306 463 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 CD19P15391 556 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 PRKCHP24723 683 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 DPP6P42658 865 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 ATXN3P54252 364 aaPredicted RBP12.17□□□□□ -0.46
USP3-220ENST00000561381 BCAT1P54687 386 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 FAM193AP78312 1265 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 FKBP3Q00688 224 aaKnown RBP12.17□□□□□ -0.46
USP3-220ENST00000561381 ADIGQ0VDE8 80 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 ENPP2Q13822 863 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 ZNF234Q14588 700 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 TRIP4Q15650 581 aaPredicted RBP12.17□□□□□ -0.46
USP3-220ENST00000561381 SGO2Q562F6 1265 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 TMEM215Q68D42 235 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 UNQ6494/PRO21346Q6UXR6 183 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 PIP4P1Q86T03 277 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 FMNL3Q8IVF7 1028 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 FAM217AQ8IXS0 508 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 RGL4Q8IZJ4 473 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms