RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SLC11A2P49281 568 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 PTP4A2Q12974 167 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 EIF4EBP2Q13542 120 aaPredicted RBP13.54□□□□□ -0.24
NEDD8-208ENST00000560427 LRRC32Q14392 662 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 TSR1Q2NL82 804 aaKnown RBP13.54□□□□□ -0.24
NEDD8-208ENST00000560427 PREPLQ4J6C6 727 aaPredicted RBP13.54□□□□□ -0.24
NEDD8-208ENST00000560427 IER5LQ5T953 404 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 SYPL2Q5VXT5 272 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 RHBDF2Q6PJF5 856 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 OR8K1Q8NGG5 319 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 SLC30A5Q8TAD4 765 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 OLIG1Q8TAK6 271 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 CPLX3Q8WVH0 158 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 NT5C3BQ969T7 300 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 PGAP3Q96FM1 320 aaPredicted RBP13.54□□□□□ -0.24
NEDD8-208ENST00000560427 SLC39A13Q96H72 371 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 DDX50Q9BQ39 737 aaKnown RBP13.54□□□□□ -0.24
NEDD8-208ENST00000560427 FAM204AQ9H8W3 233 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 SPHK2Q9NRA0 654 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 ZNHIT6Q9NWK9 470 aaKnown RBP13.54□□□□□ -0.24
NEDD8-208ENST00000560427 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.54□□□□□ -0.24
NEDD8-208ENST00000560427 TMEM59LQ9UK28 342 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 SIT1Q9Y3P8 196 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 PAXBP1Q9Y5B6 917 aa13.54□□□□□ -0.24
NEDD8-208ENST00000560427 GOLGA8SH3BPF8 625 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 STK25O00506 426 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 DDX3XO00571 662 aaKnown RBP eCLIP13.53□□□□□ -0.241e-12■□□□□ 8.2
NEDD8-208ENST00000560427 AP5Z1O43299 807 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 MFAP3LO75121 409 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 GRAP2O75791 330 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 F9P00740 461 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 CYBBP04839 570 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 MYBL1P10243 752 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 TARSP26639 723 aaKnown RBP13.53□□□□□ -0.24
NEDD8-208ENST00000560427 RPS9P46781 194 aaKnown RBP13.53□□□□□ -0.24
NEDD8-208ENST00000560427 SOX9P48436 509 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 GRSF1Q12849 480 aaKnown RBP eCLIP13.53□□□□□ -0.24
NEDD8-208ENST00000560427 UBXN2BQ14CS0 331 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 SLC25A52Q3SY17 297 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 TMEM196Q5HYL7 178 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 DGKKQ5KSL6 1271 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 LY6G5CQ5SRR4 150 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 DENND1CQ8IV53 801 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 CCDC105Q8IYK2 499 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 MCOLN2Q8IZK6 566 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 SYNPOQ8N3V7 929 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 CCDC26Q8TAB7 109 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 WBP2Q969T9 261 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 FCRL2Q96LA5 508 aaPredicted RBP13.53□□□□□ -0.24
NEDD8-208ENST00000560427 NPY6RQ99463 290 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 P2RY13Q9BPV8 354 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 FOXQ1Q9C009 403 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 ABHD10Q9NUJ1 306 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.53□□□□□ -0.24
NEDD8-208ENST00000560427 DDIT4Q9NX09 232 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 SLC12A6Q9UHW9 1150 aa13.53□□□□□ -0.24
NEDD8-208ENST00000560427 SSU72P8A0A1W2PR75 194 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 ANKRD62A6NC57 917 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 FAM170BA6NMN3 283 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 SCAMP3O14828 347 aaKnown RBP13.52□□□□□ -0.25
NEDD8-208ENST00000560427 CACNG3O60359 315 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 RTN2O75298 545 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 PENKP01210 267 aaPredicted RBP13.52□□□□□ -0.25
NEDD8-208ENST00000560427 KRT3P12035 628 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 DRD1P21728 446 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 CCR1P32246 355 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 ZNF75DP51815 510 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 TBX2Q13207 712 aaPredicted RBP13.52□□□□□ -0.25
NEDD8-208ENST00000560427 PPP2R5DQ14738 602 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 FBXO43Q4G163 708 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 C2CD6Q53TS8 623 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 ADGRF1Q5T601 910 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 ACBD5Q5T8D3 534 aaPredicted RBP13.52□□□□□ -0.25
NEDD8-208ENST00000560427 DNAJC24Q6P3W2 148 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 TXNDC11Q6PKC3 985 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 SND1Q7KZF4 910 aaKnown RBP eCLIP13.52□□□□□ -0.25
NEDD8-208ENST00000560427 TMC6Q7Z403 805 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 ZNF687Q8N1G0 1237 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 TTC8Q8TAM2 541 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 ADAM32Q8TC27 787 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 CD101Q93033 1021 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 CLDN23Q96B33 292 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 CHFRQ96EP1 664 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 BTN2A3PQ96KV6 586 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 XPO6Q96QU8 1125 aaKnown RBP13.52□□□□□ -0.25
NEDD8-208ENST00000560427 PRRX2Q99811 253 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 SELENOOQ9BVL4 669 aa13.52□□□□□ -0.25
NEDD8-208ENST00000560427 METTL5Q9NRN9 209 aaKnown RBP13.52□□□□□ -0.25
NEDD8-208ENST00000560427 TCRBV5S1A1TA0A578 114 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 SIGLEC16A6NMB1 481 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 AKR1B15C9JRZ8 316 aaPredicted RBP13.51□□□□□ -0.25
NEDD8-208ENST00000560427 M0QYT0 321 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 ACSL4O60488 711 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 SKILP12757 684 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 DESP17661 470 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 ABCB4P21439 1286 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 AVPR2P30518 371 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 SDC4P31431 198 aa13.51□□□□□ -0.25
NEDD8-208ENST00000560427 RDXP35241 583 aaKnown RBP13.51□□□□□ -0.25
NEDD8-208ENST00000560427 FLT3P36888 993 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms