RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NPY6RQ99463 290 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 EIF3CQ99613 913 aaKnown RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 DDX23Q9BUQ8 820 aaKnown RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 THAP2Q9H0W7 228 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 TRPV5Q9NQA5 729 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 SLC2A4RGQ9NR83 387 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP3-216ENST00000559873 CTTNBP2NLQ9P2B4 639 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 UVRAGQ9P2Y5 699 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 MYO1AQ9UBC5 1043 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 SFMBT1Q9UHJ3 866 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 EPN1Q9Y6I3 576 aaPredicted RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 TCF20Q9UGU0 1960 aaKnown RBP10.48□□□□□ -0.73
USP3-216ENST00000559873 SYNJ2BP-COX16A0A087WUM0 186 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 TCRBV5S1A1TA0A578 114 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 SOWAHDA6NJG2 315 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 C2CD4BA6NLJ0 364 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 ADH1CP00326 375 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 IGLV3-25P01717 112 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 ALADP13716 330 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 PSMA2P25787 234 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 CORO1AP31146 461 aaKnown RBP10.48□□□□□ -0.73
USP3-216ENST00000559873 RFC1P35251 1148 aaPredicted RBP10.48□□□□□ -0.73
USP3-216ENST00000559873 CHKAP35790 457 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 MAGEA1P43355 309 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 ZNF143P52747 638 aaPredicted RBP10.48□□□□□ -0.73
USP3-216ENST00000559873 NME3Q13232 169 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 PPP2R5DQ14738 602 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 PPP1R15BQ5SWA1 713 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 HTR3DQ70Z44 454 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 PHLDB2Q86SQ0 1253 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 RHOT2Q8IXI1 618 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 EMC1Q8N766 993 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 ATP6V0D2Q8N8Y2 350 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 JOSD2Q8TAC2 188 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 ZNF564Q8TBZ8 553 aaPredicted RBP10.48□□□□□ -0.73
USP3-216ENST00000559873 ADAM32Q8TC27 787 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 NT5C3BQ969T7 300 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 CFAP57Q96MR6 1250 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 NECAB3Q96P71 396 aaPredicted RBP10.48□□□□□ -0.73
USP3-216ENST00000559873 CNPY3Q9BT09 278 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 NUP85Q9BW27 656 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 IRX2Q9BZI1 471 aaPredicted RBP10.48□□□□□ -0.73
USP3-216ENST00000559873 GKN1Q9NS71 199 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 COX16Q9P0S2 106 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 WNT6Q9Y6F9 365 aa10.48□□□□□ -0.73
USP3-216ENST00000559873 TMEM191CA6NGB0 347 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 DCXO43602 365 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 RNF8O76064 485 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 MOCS2O96007 188 aaPredicted RBP10.47□□□□□ -0.73
USP3-216ENST00000559873 IGLV3-27P01718 113 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 CYBBP04839 570 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 CYP1A2P05177 515 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 AIF1P55008 147 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 ATP11AP98196 1134 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 CCDC173Q0VFZ6 552 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 ACAP1Q15027 740 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 CDO1Q16878 200 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 ITPRIPL2Q3MIP1 535 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 KIAA1328Q86T90 577 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 DENND1CQ8IV53 801 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 BBS7Q8IWZ6 715 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 ZNF557Q8N988 423 aaPredicted RBP10.47□□□□□ -0.73
USP3-216ENST00000559873 ST13P5Q8NFI4 369 aaPredicted RBP10.47□□□□□ -0.73
USP3-216ENST00000559873 FAM172AQ8WUF8 416 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 RFFLQ8WZ73 363 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 KHSRPQ92945 711 aaKnown RBP eCLIP10.47□□□□□ -0.733e-7■■■□□ 15.6
USP3-216ENST00000559873 AZIN2Q96A70 460 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 SLC39A13Q96H72 371 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 PDLIM2Q96JY6 352 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 BTN2A3PQ96KV6 586 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 CALR3Q96L12 384 aaKnown RBP10.47□□□□□ -0.73
USP3-216ENST00000559873 FCRL2Q96LA5 508 aaPredicted RBP10.47□□□□□ -0.73
USP3-216ENST00000559873 TBCBQ99426 244 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 FAM83CQ9BQN1 747 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 RPP25Q9BUL9 199 aaKnown RBP10.47□□□□□ -0.73
USP3-216ENST00000559873 PLA2G2FQ9BZM2 168 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 WDCPQ9H6R7 721 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 IP6K2Q9UHH9 426 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 MUTYHQ9UIF7 546 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 ANAPC7Q9UJX3 599 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 FBXL21Q9UKT6 434 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 UNC80Q8N2C7 3258 aa10.47□□□□□ -0.73
USP3-216ENST00000559873 KIF26AQ9ULI4 1882 aaPredicted RBP10.47□□□□□ -0.73
USP3-216ENST00000559873 MYO1FO00160 1098 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 CCP110O43303 1012 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 NARSO43776 548 aaKnown RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 ACSL4O60488 711 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 GJB6O95452 261 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 CXCR3P49682 368 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 MLLT6P55198 1093 aaPredicted RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 RPL7AP62424 266 aaKnown RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 ZXDBP98169 803 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 GAD2Q05329 585 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 RUNX3Q13761 415 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 PIGHQ14442 188 aaPredicted RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 EML3Q32P44 896 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 CCDC14Q49A88 953 aa10.46□□□□□ -0.73
USP3-216ENST00000559873 PREPLQ4J6C6 727 aaPredicted RBP10.46□□□□□ -0.73
USP3-216ENST00000559873 ZC3H12AQ5D1E8 599 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms