RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 SLC12A8A0AV02 714 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 CETN3O15182 167 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 CEACAM1P13688 526 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 CSRP1P21291 193 aaKnown RBP12.2□□□□□ -0.46
USP3-214ENST00000559718 MFAP3P55082 362 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 YWHAGP61981 247 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP3-214ENST00000559718 COG7P83436 770 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 GEN1Q17RS7 908 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 GOLGA7BQ2TAP0 167 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 DCAF17Q5H9S7 520 aaPredicted RBP12.2□□□□□ -0.46
USP3-214ENST00000559718 RAB41Q5JT25 222 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 TCERG1LQ5VWI1 586 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 ANKRD40Q6AI12 368 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 KIAA1324Q6UXG2 1013 aaKnown RBP12.2□□□□□ -0.46
USP3-214ENST00000559718 SLC36A4Q6YBV0 504 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 BHLHA9Q7RTU4 235 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 TADA2BQ86TJ2 420 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 DENND1CQ8IV53 801 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 TRIML1Q8N9V2 468 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 ANKRD52Q8NB46 1076 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 HSPA12BQ96MM6 686 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 GTPBP2Q9BX10 602 aaKnown RBP12.2□□□□□ -0.46
USP3-214ENST00000559718 ULBP1Q9BZM6 244 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 MARCH2Q9P0N8 246 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 WASF3Q9UPY6 502 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 ATP6V1DQ9Y5K8 247 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 STON1Q9Y6Q2 735 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 USP24Q9UPU5 2620 aa12.2□□□□□ -0.46
USP3-214ENST00000559718 TRIM49BA6NDI0 452 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 C1QTNF9BB2RNN3 333 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 ARHGAP33O14559 1287 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 ZBTB24O43167 697 aaPredicted RBP12.19□□□□□ -0.46
USP3-214ENST00000559718 ZNF217O75362 1048 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 C1QTNF9P0C862 333 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 IL12RB1P42701 662 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 TKTL1P51854 596 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 PDE4CQ08493 712 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 DUOXA1Q1HG43 343 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 FUT11Q495W5 492 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 RSRC2Q7L4I2 434 aaKnown RBP12.19□□□□□ -0.46
USP3-214ENST00000559718 FMR1NBQ8N0W7 255 aaPredicted RBP12.19□□□□□ -0.46
USP3-214ENST00000559718 SORCS1Q8WY21 1168 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 FAXDC2Q96IV6 333 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 CDK5RAP1Q96SZ6 601 aaKnown RBP12.19□□□□□ -0.46
USP3-214ENST00000559718 UBXN6Q9BZV1 441 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 DNAI2Q9GZS0 605 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 CAPN10Q9HC96 672 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 SLC6A14Q9UN76 642 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 ZNF510Q9Y2H8 683 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 SLC27A6Q9Y2P4 619 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 PCDH15Q96QU1 1955 aa12.19□□□□□ -0.46
USP3-214ENST00000559718 SPAARA0A1B0GVQ0 90 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 GFRA2O00451 464 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 STX10O60499 249 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 ZBED1O96006 694 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 SERPINF2P08697 491 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 MAOBP27338 520 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 HOXD12P35452 270 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 CHKAP35790 457 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 GFPT1Q06210 699 aaPredicted RBP12.18□□□□□ -0.46
USP3-214ENST00000559718 LRMPQ12912 555 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 SEMA3BQ13214 749 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 CUL2Q13617 745 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 ZNF658Q5TYW1 1059 aaPredicted RBP12.18□□□□□ -0.46
USP3-214ENST00000559718 PM20D1Q6GTS8 502 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 ZC3H3Q8IXZ2 948 aaKnown RBP12.18□□□□□ -0.46
USP3-214ENST00000559718 ARHGAP18Q8N392 663 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 TTC39CQ8N584 583 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 CEP76Q8TAP6 659 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 UBA3Q8TBC4 463 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 PIWIL1Q96J94 861 aaKnown RBP12.18□□□□□ -0.46
USP3-214ENST00000559718 DCLK3Q9C098 648 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 MKRN2Q9H000 416 aaKnown RBP12.18□□□□□ -0.46
USP3-214ENST00000559718 THAP10Q9P2Z0 257 aaPredicted RBP12.18□□□□□ -0.46
USP3-214ENST00000559718 SFMBT1Q9UHJ3 866 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 TSPAN16Q9UKR8 245 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 STRIP2Q9ULQ0 834 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 COQ4Q9Y3A0 265 aa12.18□□□□□ -0.46
USP3-214ENST00000559718 FRYQ5TBA9 3013 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 XPO1O14980 1071 aaKnown RBP12.17□□□□□ -0.46
USP3-214ENST00000559718 SLC16A3O15427 465 aaKnown RBP12.17□□□□□ -0.46
USP3-214ENST00000559718 NDUFS2O75306 463 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 CD19P15391 556 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 PRKCHP24723 683 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 DPP6P42658 865 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 ATXN3P54252 364 aaPredicted RBP12.17□□□□□ -0.46
USP3-214ENST00000559718 BCAT1P54687 386 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 FAM193AP78312 1265 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 FKBP3Q00688 224 aaKnown RBP12.17□□□□□ -0.46
USP3-214ENST00000559718 ADIGQ0VDE8 80 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 ENPP2Q13822 863 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 ZNF234Q14588 700 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 TRIP4Q15650 581 aaPredicted RBP12.17□□□□□ -0.46
USP3-214ENST00000559718 SGO2Q562F6 1265 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 TMEM215Q68D42 235 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 UNQ6494/PRO21346Q6UXR6 183 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 PIP4P1Q86T03 277 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 FMNL3Q8IVF7 1028 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 FAM217AQ8IXS0 508 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 RGL4Q8IZJ4 473 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms