RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PTK7Q13308 1070 aa11□□□□□ -0.65
CUX1-217ENST00000558836 EFHC1Q5JVL4 640 aa11□□□□□ -0.65
CUX1-217ENST00000558836 TRMT10BQ6PF06 316 aaKnown RBP11□□□□□ -0.65
CUX1-217ENST00000558836 ADGRD1Q6QNK2 874 aa11□□□□□ -0.65
CUX1-217ENST00000558836 SPATA21Q7Z572 469 aa11□□□□□ -0.65
CUX1-217ENST00000558836 TOP6BLQ8N6T0 577 aa11□□□□□ -0.65
CUX1-217ENST00000558836 SERAC1Q96JX3 654 aa11□□□□□ -0.65
CUX1-217ENST00000558836 SMOQ99835 787 aa11□□□□□ -0.65
CUX1-217ENST00000558836 MTG1Q9BT17 334 aaPredicted RBP11□□□□□ -0.65
CUX1-217ENST00000558836 KLC2Q9H0B6 622 aa11□□□□□ -0.65
CUX1-217ENST00000558836 FAM124BQ9H5Z6 455 aaPredicted RBP11□□□□□ -0.65
CUX1-217ENST00000558836 PLAC1Q9HBJ0 212 aa11□□□□□ -0.65
CUX1-217ENST00000558836 IL1RAPL1Q9NZN1 696 aa11□□□□□ -0.65
CUX1-217ENST00000558836 SLC17A6Q9P2U8 582 aa11□□□□□ -0.65
CUX1-217ENST00000558836 SLC24A2Q9UI40 661 aa11□□□□□ -0.65
CUX1-217ENST00000558836 IKBKGQ9Y6K9 419 aa11□□□□□ -0.65
CUX1-217ENST00000558836 PDCD11Q14690 1871 aaKnown RBP11□□□□□ -0.65
CUX1-217ENST00000558836 BCLAF3A2AJT9 711 aaKnown RBP10.99□□□□□ -0.65
CUX1-217ENST00000558836 UBOX5O94941 541 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 FAM200BP0CF97 657 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 NCAM1P13591 858 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ARL4AP40617 200 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ACADSBP45954 432 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 BMPR2Q13873 1038 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 TIGD5Q53EQ6 642 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 SLC45A4Q5BKX6 768 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 HHATQ5VTY9 493 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 HEATR6Q6AI08 1181 aaKnown RBP10.99□□□□□ -0.65
CUX1-217ENST00000558836 LIMS2Q7Z4I7 341 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ZMIZ2Q8NF64 920 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 CYTH2Q99418 400 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 SYT15Q9BQS2 421 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ARHGEF4Q9NR80 690 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 TRMT13Q9NUP7 481 aaKnown RBP10.99□□□□□ -0.65
CUX1-217ENST00000558836 FZD10Q9ULW2 581 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ABT1Q9ULW3 272 aaKnown RBP10.99□□□□□ -0.65
CUX1-217ENST00000558836 TRPV2Q9Y5S1 764 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ACTL7BQ9Y614 415 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ATXN2Q99700 1313 aaKnown RBP10.99□□□□□ -0.65
CUX1-217ENST00000558836 KCNK1O00180 336 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 GABRDO14764 452 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 CHADO15335 359 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ASGR1P07306 291 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 CCND3P30281 292 aaPredicted RBP10.99□□□□□ -0.65
CUX1-217ENST00000558836 LRPAP1P30533 357 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 HOXC8P31273 242 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 PRKCZQ05513 592 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 DEUP1Q05D60 604 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 SPARCL1Q14515 664 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 VPS52Q8N1B4 723 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 FITM2Q8N6M3 262 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 PDCD7Q8N8D1 485 aaKnown RBP10.99□□□□□ -0.65
CUX1-217ENST00000558836 STKLD1Q8NE28 680 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 DEPDC1BQ8WUY9 529 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 SOCS4Q8WXH5 440 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 SGSM3Q96HU1 749 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 TMEM209Q96SK2 561 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 SMYD2Q9NRG4 433 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 PADI3Q9ULW8 664 aa10.99□□□□□ -0.65
CUX1-217ENST00000558836 ITGB1P05556 798 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 INHBAP08476 426 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 F7P08709 466 aaPredicted RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 PYGBP11216 843 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 ATP2A2P16615 1042 aaKnown RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 GBP2P32456 591 aaPredicted RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 RPL34P49207 117 aaKnown RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 OVGP1Q12889 678 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 NR1H3Q13133 447 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 ITIH4Q14624 930 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 SEPT7Q16181 437 aaKnown RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 KLHL38Q2WGJ6 581 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 CASC4Q6P4E1 433 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 MZB1Q8WU39 189 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 SENP6Q9GZR1 1112 aaPredicted RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 PHTF1Q9UMS5 762 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 SUN1O94901 812 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 OAS1P00973 400 aaKnown RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 MT-ND3P03897 115 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 CYBAP13498 195 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 BDNFP23560 247 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 KCNA10Q16322 511 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 ZNF534Q76KX8 674 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 RNF139Q8WU17 664 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 HTR3CQ8WXA8 447 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 AGAP3Q96P47 875 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 DHRS4Q9BTZ2 278 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 KDM4CQ9H3R0 1056 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 POPDC2Q9HBU9 364 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.98□□□□□ -0.651e-7■□□□□ 11.2
CUX1-217ENST00000558836 TRIM33Q9UPN9 1127 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 Q9Y3F1 56 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 USP3Q9Y6I4 520 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 PRPF4O43172 522 aaKnown RBP eCLIP10.98□□□□□ -0.655e-7■■□□□ 12.4
CUX1-217ENST00000558836 TOP3BO95985 862 aaKnown RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 HNRNPH1P31943 449 aaKnown RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 SESN2P58004 480 aaPredicted RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 CACNB2Q08289 660 aaPredicted RBP10.98□□□□□ -0.65
CUX1-217ENST00000558836 MTFR1Q15390 333 aa10.98□□□□□ -0.65
CUX1-217ENST00000558836 ANKRD20A2Q5SQ80 823 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms