RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 SEPT4O43236 478 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 CREB3O43889 395 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 TYROBPO43914 113 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 SNX3O60493 162 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 DGKIO75912 1065 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 FSBPO95073 299 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 ASMTLO95671 621 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 CPP00450 1065 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 USP17L7P0C7H9 530 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 INHBEP58166 350 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 DAOAP59103 153 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 NR1H3Q13133 447 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 UPP1Q16831 310 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 KLHL38Q2WGJ6 581 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 KBTBD12Q3ZCT8 623 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 FAM72AQ5TYM5 149 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 FBXW10Q5XX13 1052 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 FAM72DQ6L9T8 149 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 ADGRD1Q6QNK2 874 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 ARHGEF18Q6ZSZ5 1173 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 DENND5BQ6ZUT9 1274 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 FAM47EQ6ZV65 393 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 BHLHA9Q7RTU4 235 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 FAM72BQ86X60 149 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 SLC7A14Q8TBB6 771 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 NT5C3BQ969T7 300 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 THOC1Q96FV9 657 aaKnown RBP10.48□□□□□ -0.73
TMEM260-211ENST00000556648 MAGEB18Q96M61 343 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 OLFM3Q96PB7 478 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 SMC6Q96SB8 1091 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 NCAPGQ9BPX3 1015 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 NSRP1Q9H0G5 558 aaKnown RBP10.48□□□□□ -0.73
TMEM260-211ENST00000556648 TRMT13Q9NUP7 481 aaKnown RBP10.48□□□□□ -0.73
TMEM260-211ENST00000556648 TMLHEQ9NVH6 421 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 INPP5FQ9Y2H2 1132 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 SMAPO00193 183 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 C1QAP02745 245 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 KRT4P19013 534 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 NOS2P35228 1153 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 MSH2P43246 934 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 MAGEA6P43360 314 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 DEUP1Q05D60 604 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 ACTN3Q08043 901 aaPredicted RBP10.48□□□□□ -0.73
TMEM260-211ENST00000556648 FAAP100Q0VG06 881 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 DSC3Q14574 896 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 ITIH4Q14624 930 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 LPIN1Q14693 890 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 PPP1R21Q6ZMI0 780 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 PAXIP1Q6ZW49 1069 aaPredicted RBP10.48□□□□□ -0.73
TMEM260-211ENST00000556648 MRPL10Q7Z7H8 261 aaKnown RBP10.48□□□□□ -0.73
TMEM260-211ENST00000556648 PPM1EQ8WY54 764 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 EDEM1Q92611 657 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 MYLPFQ96A32 169 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 SERAC1Q96JX3 654 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 KLC2Q9H0B6 622 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 CHST12Q9NRB3 414 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 SMYD2Q9NRG4 433 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 GIT1Q9Y2X7 761 aa10.48□□□□□ -0.73
TMEM260-211ENST00000556648 TDRD15B5MCY1 1934 aaKnown RBP10.47□□□□□ -0.73
TMEM260-211ENST00000556648 UGT1A9O60656 530 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 ITGB1P05556 798 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 ZFXP17010 805 aaPredicted RBP10.47□□□□□ -0.73
TMEM260-211ENST00000556648 CA4P22748 312 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 ARL4AP40617 200 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 TM4SF4P48230 202 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 SLC8A3P57103 927 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 IL9RQ01113 521 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 DNAJC3Q13217 504 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 XRCC4Q13426 336 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 DPYSQ14117 519 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 RASA2Q15283 850 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 CCSAPQ6IQ19 270 aaPredicted RBP10.47□□□□□ -0.73
TMEM260-211ENST00000556648 HACE1Q8IYU2 909 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 SGSM3Q96HU1 749 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 DNAI2Q9GZS0 605 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 UGT1A7Q9HAW7 530 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 UGT1A10Q9HAW8 530 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 UGT1A8Q9HAW9 530 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 SPC25Q9HBM1 224 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 WDR6Q9NNW5 1121 aaKnown RBP10.47□□□□□ -0.73
TMEM260-211ENST00000556648 PIH1D1Q9NWS0 290 aaKnown RBP10.47□□□□□ -0.73
TMEM260-211ENST00000556648 SLC17A7Q9P2U7 560 aa10.47□□□□□ -0.73
TMEM260-211ENST00000556648 USP15Q9Y4E8 981 aaPredicted RBP10.47□□□□□ -0.73
TMEM260-211ENST00000556648 TMEM88BA6NKF7 163 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 H3BRJ5 948 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 GPR182O15218 404 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 B4GALT3O60512 393 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 GCATO75600 419 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 PRKAR2AP13861 404 aaKnown RBP10.46□□□□□ -0.73
TMEM260-211ENST00000556648 TSHRP16473 764 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 ADRA1DP25100 572 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 SCTRP47872 440 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 LHX1P48742 406 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 NR2C2P49116 596 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 NKX3-2P78367 333 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 PTK7Q13308 1070 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 TRIM71Q2Q1W2 868 aaKnown RBP10.46□□□□□ -0.73
TMEM260-211ENST00000556648 RAB41Q5JT25 222 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 HEATR6Q6AI08 1181 aaKnown RBP10.46□□□□□ -0.73
TMEM260-211ENST00000556648 SPATA21Q7Z572 469 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms