RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 RFFLQ8WZ73 363 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 E2F7Q96AV8 911 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 PLD4Q96BZ4 506 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 CNPY3Q9BT09 278 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 RAB6CQ9H0N0 254 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 THG1LQ9NWX6 298 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ADGRG1Q9Y653 693 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 C2orf16Q68DN1 1984 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 MYO1FO00160 1098 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 IGLV3-25P01717 112 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 TJAP1Q5JTD0 557 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 SCYL2Q6P3W7 929 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 DENND1CQ8IV53 801 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 TXLNBQ8N3L3 684 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 NT5C3BQ969T7 300 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 ZFYVE19Q96K21 471 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 NECAB3Q96P71 396 aaPredicted RBP14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 OBP2AQ9NY56 170 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 WNT6Q9Y6F9 365 aa14.61□□□□□ -0.07
VIPAS39-208ENST00000556412 A0A0U1RQJ8 604 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 F9P00740 461 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 CCDC175P0C221 793 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 PSMC3P17980 439 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 GDI1P31150 447 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 CCR1P32246 355 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 SSR1P43307 286 aaKnown RBP14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 ZNF252P-AS1Q0IIN9 211 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 KIF5AQ12840 1032 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 NUGGCQ68CJ6 796 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 MFSD6LQ8IWD5 586 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 BBS7Q8IWZ6 715 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 ATRIPQ8WXE1 791 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 FCRL2Q96LA5 508 aaPredicted RBP14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 TRMT61BQ9BVS5 477 aaKnown RBP14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 LACRTQ9GZZ8 138 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 IGSF9Q9P2J2 1179 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 IP6K2Q9UHH9 426 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 DUSP10Q9Y6W6 482 aa14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 SPTBN5Q9NRC6 3674 aaKnown RBP14.6□□□□□ -0.07
VIPAS39-208ENST00000556412 E2F8A0AVK6 867 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 BUB1O43683 1085 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 RNF8O76064 485 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 KLKB1P03952 638 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 IFNAR2P48551 515 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 NNTQ13423 1086 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 MESDQ14696 234 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 DAB2IPQ5VWQ8 1189 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 TRIM68Q6AZZ1 485 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 UNC45BQ8IWX7 931 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 DEPDC1BQ8WUY9 529 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 DCLK3Q9C098 648 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 WDCPQ9H6R7 721 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 DUS2Q9NX74 493 aaKnown RBP14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 TRIM10Q9UDY6 481 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 AGO1Q9UL18 857 aaKnown RBP14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 PAXBP1Q9Y5B6 917 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 MYH10P35580 1976 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 MYO16Q9Y6X6 1858 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 MACROD2A1Z1Q3 448 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 IGLV3-27P01718 113 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 SLC2A3P11169 496 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 SLC11A2P49281 568 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 HDAC4P56524 1084 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 RING1Q06587 406 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 STRADAQ7RTN6 431 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 SLC44A3Q8N4M1 653 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 FNIP1Q8TF40 1166 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 NXPE3Q969Y0 559 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 PGAP3Q96FM1 320 aaPredicted RBP14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 SLC39A13Q96H72 371 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 TKTL2Q9H0I9 626 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 LINC00597Q9H2U6 94 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 BRD9Q9H8M2 597 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 PCSK1NQ9UHG2 260 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 SLC12A6Q9UHW9 1150 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 XPO7Q9UIA9 1087 aaKnown RBP14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 BRWD1Q9NSI6 2320 aa14.59□□□□□ -0.07
VIPAS39-208ENST00000556412 NOTCH4Q99466 2003 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 TCF3P15923 654 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 CXCR3P49682 368 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 VCPP55072 806 aaKnown RBP14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 PIGHQ14442 188 aaPredicted RBP14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 HTR3DQ70Z44 454 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 GJD3Q8N144 294 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 ATP6V0D2Q8N8Y2 350 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 TTC8Q8TAM2 541 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 OSCP1Q8WVF1 389 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 CENPIQ92674 756 aaPredicted RBP14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 ASIC4Q96FT7 647 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 EBF3Q9H4W6 596 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 LZTFL1Q9NQ48 299 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 TMPRSS4Q9NRS4 437 aa14.58□□□□□ -0.08
VIPAS39-208ENST00000556412 C5orf42Q9H799 3197 aa14.57□□□□□ -0.08
VIPAS39-208ENST00000556412 C19orf67A6NJJ6 358 aa14.57□□□□□ -0.08
VIPAS39-208ENST00000556412 SLC9A3R1O14745 358 aaPredicted RBP14.57□□□□□ -0.08
VIPAS39-208ENST00000556412 GREM1O60565 184 aa14.57□□□□□ -0.08
VIPAS39-208ENST00000556412 GGCXP38435 758 aa14.57□□□□□ -0.08
VIPAS39-208ENST00000556412 TNK2Q07912 1038 aa14.57□□□□□ -0.08
VIPAS39-208ENST00000556412 FCHO2Q0JRZ9 810 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms