RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 SLC11A1P49279 550 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 GATMP50440 423 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 NME3Q13232 169 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 EFHC2Q5JST6 749 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 PRPF38BQ5VTL8 546 aaKnown RBP15.26■□□□□ 0.03
VPS33B-205ENST00000556096 VSTM1Q6UX27 236 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 BZW1Q7L1Q6 419 aaKnown RBP15.26■□□□□ 0.03
VPS33B-205ENST00000556096 OTOP2Q7RTS6 562 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 ZC3H18Q86VM9 953 aaKnown RBP15.26■□□□□ 0.03
VPS33B-205ENST00000556096 HOOK3Q86VS8 718 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 PPIL6Q8IXY8 311 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 FAM71DQ8N9W8 422 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 C8orf48Q96LL4 319 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 MAGEB5Q9BZ81 275 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 PHACTR1Q9C0D0 580 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 IL23AQ9NPF7 189 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 MARCH5Q9NX47 278 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 HEY1Q9Y5J3 304 aa15.26■□□□□ 0.03
VPS33B-205ENST00000556096 PATJQ8NI35 1801 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 SF3B1O75533 1304 aaKnown RBP eCLIP15.25■□□□□ 0.038e-6■■■■■ 107
VPS33B-205ENST00000556096 SHBGP04278 402 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 GALTP07902 379 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 OR4Q2P0C623 313 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 GOT1P17174 413 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 MAGEA11P43364 429 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 CXCR3P49682 368 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 ZNF135P52742 658 aaPredicted RBP15.25■□□□□ 0.03
VPS33B-205ENST00000556096 ARL13BQ3SXY8 428 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 KRT71Q3SY84 523 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 FAM171A1Q5VUB5 890 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 ZNF280DQ6N043 979 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 C4orf22Q6V702 233 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 CDKL3Q8IVW4 592 aaPredicted RBP15.25■□□□□ 0.03
VPS33B-205ENST00000556096 PYROXD2Q8N2H3 581 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 RNF139Q8WU17 664 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 OXCT2Q9BYC2 517 aaPredicted RBP15.25■□□□□ 0.03
VPS33B-205ENST00000556096 GPR62Q9BZJ7 368 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 ROPN1BQ9BZX4 212 aaPredicted RBP15.25■□□□□ 0.03
VPS33B-205ENST00000556096 ROPN1Q9HAT0 212 aaPredicted RBP15.25■□□□□ 0.03
VPS33B-205ENST00000556096 PCDHB5Q9Y5E4 795 aa15.25■□□□□ 0.03
VPS33B-205ENST00000556096 SYNJ2BP-COX16A0A087WUM0 186 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 TBKBP1A7MCY6 615 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 AMPD1P23109 780 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 HCAR3P49019 387 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 SLC5A3P53794 718 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 PPIGQ13427 754 aaKnown RBP eCLIP15.24■□□□□ 0.033e-7■■■■■ 28.4
VPS33B-205ENST00000556096 IKBKEQ14164 716 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 CTXN3Q4LDR2 81 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 C9orf50Q5SZB4 431 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 NCBP2-AS2Q69YL0 99 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.24■□□□□ 0.03
VPS33B-205ENST00000556096 TMCO2Q7Z6W1 182 aaPredicted RBP15.24■□□□□ 0.03
VPS33B-205ENST00000556096 NAT8LQ8N9F0 302 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 SCAMP5Q8TAC9 235 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 CPT1BQ92523 772 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 PRCCQ92733 491 aaPredicted RBP15.24■□□□□ 0.03
VPS33B-205ENST00000556096 RBM15Q96T37 977 aaKnown RBP eCLIP15.24■□□□□ 0.03
VPS33B-205ENST00000556096 ARHGEF4Q9NR80 690 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 ABCC13Q9NSE7 274 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 TMEM51Q9NW97 253 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 DDIT4Q9NX09 232 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.24■□□□□ 0.03
VPS33B-205ENST00000556096 COX16Q9P0S2 106 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 PAK5Q9P286 719 aa15.24■□□□□ 0.03
VPS33B-205ENST00000556096 HACD1B0YJ81 288 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 TRIM66O15016 1216 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 IGLV3-25P01717 112 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 ACTN2P35609 894 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 YWHAGP61981 247 aaKnown RBP eCLIP15.23■□□□□ 0.03
VPS33B-205ENST00000556096 SMARCB1Q12824 385 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 SLC10A2Q12908 348 aaPredicted RBP15.23■□□□□ 0.03
VPS33B-205ENST00000556096 SEMA3BQ13214 749 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 EIF4EBP2Q13542 120 aaPredicted RBP15.23■□□□□ 0.03
VPS33B-205ENST00000556096 SLC45A4Q5BKX6 768 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 C6orf118Q5T5N4 469 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 KCTD16Q68DU8 428 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 FUT10Q6P4F1 479 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 CHRDL2Q6WN34 429 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 LRRC43Q8N309 656 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 EDEM1Q92611 657 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 PGM2Q96G03 612 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 PWWP2AQ96N64 755 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 UBE2OQ9C0C9 1292 aaKnown RBP15.23■□□□□ 0.03
VPS33B-205ENST00000556096 ABI2Q9NYB9 513 aaPredicted RBP15.23■□□□□ 0.03
VPS33B-205ENST00000556096 NINJ2Q9NZG7 142 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 ZBBXA8MT70 800 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 H7C4K7 107 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 EIF3HO15372 352 aaKnown RBP eCLIP15.23■□□□□ 0.03
VPS33B-205ENST00000556096 TBC1D4O60343 1298 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 DGKIO75912 1065 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 RBL1P28749 1068 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 MAGEA4P43358 317 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 SKOR1P84550 965 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 GBE1Q04446 702 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 CBLBQ13191 982 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 DPYSQ14117 519 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 PAFAH1B3Q15102 231 aaKnown RBP15.23■□□□□ 0.03
VPS33B-205ENST00000556096 KYNUQ16719 465 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 TMEM240Q5SV17 173 aa15.23■□□□□ 0.03
VPS33B-205ENST00000556096 UBAP2Q5T6F2 1119 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms