RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 STAP1Q9ULZ2 295 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 FARP1Q9Y4F1 1045 aaPredicted RBP13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 MAGEA4P43358 317 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC5A3P53794 718 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 CAV1Q03135 178 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 FAAP100Q0VG06 881 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 VARS2Q5ST30 1063 aaKnown RBP13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 CCDC110Q8TBZ0 833 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 BCL7CQ8WUZ0 217 aaPredicted RBP13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 CEP41Q9BYV8 373 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 ARHGEF4Q9NR80 690 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 MARCH5Q9NX47 278 aa13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.22□□□□□ -0.29
VIPAS39-206ENST00000553888 TBKBP1A7MCY6 615 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 HMGB1P1B2RPK0 211 aaPredicted RBP13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 MFSD11O43934 449 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 FBXO21O94952 628 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 TYMPP19971 482 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 TLE2Q04725 743 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 SPDYCQ5MJ68 293 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 RSPO2Q6UXX9 243 aaPredicted RBP13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 TRMT10CQ7L0Y3 403 aaKnown RBP13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 TAS1R1Q7RTX1 841 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 TAC4Q86UU9 113 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 ATAD1Q8NBU5 361 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 RNF139Q8WU17 664 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 SEPT8Q92599 483 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 WDR83Q9BRX9 315 aaKnown RBP13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 DTLQ9NZJ0 730 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 LRFN2Q9ULH4 789 aa13.21□□□□□ -0.29
VIPAS39-206ENST00000553888 TGM2P21980 687 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 KCNT2Q6UVM3 1135 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 SLC39A5Q6ZMH5 540 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 ZBED8Q8IZ13 594 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 NAT8LQ8N9F0 302 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 BBOF1Q8ND07 529 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 LGMNQ99538 433 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 FAM129AQ9BZQ8 928 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 ADAM28Q9UKQ2 775 aa13.21□□□□□ -0.3
VIPAS39-206ENST00000553888 MSI1O43347 362 aaKnown RBP13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 PDIA2Q13087 525 aaKnown RBP13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 MORF4L2Q15014 288 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 CCHCR1Q8TD31 782 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 BEGAINQ9BUH8 593 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 SFMBT1Q9UHJ3 866 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 PITPNM1O00562 1244 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 AVILO75366 819 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 VAV1P15498 845 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 ADRA1BP35368 520 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 EIF3BP55884 814 aaKnown RBP13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 GNGT1P63211 74 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 AUHQ13825 339 aaKnown RBP13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 CRIPAKQ8N1N5 446 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 MDM1Q8TC05 714 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 MRRFQ96E11 262 aaKnown RBP13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 FRMD8P1Q9BZ68 369 aaPredicted RBP13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 ZCWPW1Q9H0M4 648 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 NMUR1Q9HB89 426 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 OSER1Q9NX31 292 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 KANSL3Q9P2N6 904 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 TBK1Q9UHD2 729 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 XPO7Q9UIA9 1087 aaKnown RBP13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 SLC27A5Q9Y2P5 690 aa13.2□□□□□ -0.3
VIPAS39-206ENST00000553888 TNFRSF10BO14763 440 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 RASGRF2O14827 1237 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 OAZ2O95190 189 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 ARL4AP40617 200 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 USP46P62068 366 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 CTXN3Q4LDR2 81 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 RTP2Q5QGT7 225 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 PM20D1Q6GTS8 502 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 PPIL6Q8IXY8 311 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 CAPS2Q9BXY5 557 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 CRISPLD1Q9H336 500 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 RAB6BQ9NRW1 208 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 GREB1Q4ZG55 1949 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 CREB1P16220 341 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 EFHC2Q5JST6 749 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 KDM7AQ6ZMT4 941 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 SCD5Q86SK9 330 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 CYP4X1Q8N118 509 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 DQX1Q8TE96 717 aaKnown RBP13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 COLEC11Q9BWP8 271 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 TKTL2Q9H0I9 626 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 SHOC2Q9UQ13 582 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 ATP11BQ9Y2G3 1177 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 TMEM189-UBE2V1I3L0A0 370 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 EEF2KO00418 725 aaKnown RBP13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 RGS16O15492 202 aaPredicted RBP13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 HIF1AQ16665 826 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 AGBL2Q5U5Z8 902 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 FAM117BQ6P1L5 589 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 PRSS55Q6UWB4 352 aaPredicted RBP13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 HOOK3Q86VS8 718 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 IGDCC3Q8IVU1 814 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 AGGF1Q8N302 714 aaeCLIP13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 TLCD1Q96CP7 247 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 VWCEQ96DN2 955 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 NCAPGQ9BPX3 1015 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms