RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 LRRC46Q96FV0 321 aa4.66□□□□□ -1.66
SCFD1-210ENST00000553693 TRMT61AQ96FX7 289 aaKnown RBP4.66□□□□□ -1.66
SCFD1-210ENST00000553693 P2RY11Q96G91 374 aa4.66□□□□□ -1.66
SCFD1-210ENST00000553693 PRR11Q96HE9 360 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-210ENST00000553693 RXFP3Q9NSD7 469 aa4.66□□□□□ -1.66
SCFD1-210ENST00000553693 TMEM45AQ9NWC5 275 aa4.66□□□□□ -1.66
SCFD1-210ENST00000553693 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-210ENST00000553693 PCDHB2Q9Y5E7 798 aa4.66□□□□□ -1.66
SCFD1-210ENST00000553693 HEMK1Q9Y5R4 338 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-210ENST00000553693 A0A087WZ62 844 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 LOC105371045A0A1W2PR82 267 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 POM121BA6NF01 834 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 CD8B2A6NJW9 211 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 F8W810 466 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 CBFA2T3O75081 653 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 ARP10275 920 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 TFEBP19484 476 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 FGFR2P21802 821 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 MST1P26927 711 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 VPS41P49754 854 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 ZNF543Q08ER8 600 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 BFSP2Q13515 415 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 LEXMQ3ZCV2 418 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 EARS2Q5JPH6 523 aaKnown RBP4.65□□□□□ -1.67
SCFD1-210ENST00000553693 TLDC1Q6P9B6 456 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 RBM44Q6ZP01 1051 aaKnown RBP4.65□□□□□ -1.67
SCFD1-210ENST00000553693 COLCA1Q6ZS62 124 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 MMP21Q8N119 569 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 CLASRPQ8N2M8 674 aaKnown RBP4.65□□□□□ -1.67
SCFD1-210ENST00000553693 ZNF548Q8NEK5 533 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-210ENST00000553693 AKAP1Q92667 903 aaKnown RBP eCLIP4.65□□□□□ -1.67
SCFD1-210ENST00000553693 PMM1Q92871 262 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 TUBB6Q9BUF5 446 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 SCNM1Q9BWG6 230 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 COLEC11Q9BWP8 271 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 EIF2AQ9BY44 585 aaKnown RBP4.65□□□□□ -1.67
SCFD1-210ENST00000553693 METTL14Q9HCE5 456 aaKnown RBP4.65□□□□□ -1.67
SCFD1-210ENST00000553693 ASNSD1Q9NWL6 643 aa4.65□□□□□ -1.67
SCFD1-210ENST00000553693 KCNQ3O43525 872 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 TOMM40O96008 361 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 CRYABP02511 175 aaKnown RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 CBSLP0DN79 551 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 TSHRP16473 764 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 NDUFS1P28331 727 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 HOXA7P31268 230 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 CBSP35520 551 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 IGHMBP2P38935 993 aaKnown RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 PIK3CBP42338 1070 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 MTA1Q13330 715 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 FHL3Q13643 280 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 GLE1Q53GS7 698 aaKnown RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 FAM90A2PQ658T7 463 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 KRTAP5-4Q6L8H1 288 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 LVRNQ6Q4G3 990 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 CCDC28AQ8IWP9 274 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 OR52L2PQ8NGH6 319 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 NLRP4Q96MN2 994 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 EIF3CQ99613 913 aaKnown RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 SEMA4BQ9NPR2 832 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 PAPOLBQ9NRJ5 636 aaKnown RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 KLHL42Q9P2K6 505 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 MYO1AQ9UBC5 1043 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 VPS4AQ9UN37 437 aa4.64□□□□□ -1.67
SCFD1-210ENST00000553693 ZNF335Q9H4Z2 1342 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-210ENST00000553693 IGKV2D-30A0A075B6S6 120 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 A0A1W2PPC4 97 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 SLC22A23A1A5C7 686 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 B4DGG1 531 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 KPNA5O15131 536 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 ZSCAN9O15535 394 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 IL6STP40189 918 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 GSTM5P46439 218 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 CASP5P51878 434 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 SEMA3BQ13214 749 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 IFIT5Q13325 482 aaKnown RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 GPR162Q16538 588 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 TMEM196Q5HYL7 178 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 KLHDC7AQ5VTJ3 777 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 DAB2IPQ5VWQ8 1189 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 CRELD2Q6UXH1 353 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 C9orf47Q6ZRZ4 202 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 TFAP2DQ7Z6R9 452 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 FMNL3Q8IVF7 1028 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 WIPF2Q8TF74 440 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 IGFBPL1Q8WX77 278 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 KAT2BQ92831 832 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 GRAMD1AQ96CP6 724 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 MARK4Q96L34 752 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 TRIM2Q9C040 744 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 FAM234AQ9H0X4 552 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 AS3MTQ9HBK9 375 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 AGO4Q9HCK5 861 aaKnown RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 ERVK-5Q9HDB9 667 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 ZBTB40Q9NUA8 1239 aa4.63□□□□□ -1.67
SCFD1-210ENST00000553693 TTBK1Q5TCY1 1321 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-210ENST00000553693 IGLV5-39A0A0G2JS06 123 aa4.62□□□□□ -1.67
SCFD1-210ENST00000553693 FAM90A8PA6NJQ4 464 aa4.62□□□□□ -1.67
SCFD1-210ENST00000553693 C16orf96A6NNT2 1141 aa4.62□□□□□ -1.67
SCFD1-210ENST00000553693 PRYO14603 147 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms