RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 CEP295NLQ96MC4 621 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 SLC46A1Q96NT5 459 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 SLC22A12Q96S37 553 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 ELF4Q99607 663 aaPredicted RBP5.51□□□□□ -1.53
CKAP4-203ENST00000553039 RNF26Q9BY78 433 aaPredicted RBP5.51□□□□□ -1.53
CKAP4-203ENST00000553039 CDT1Q9H211 546 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 RWDD1Q9H446 243 aaPredicted RBP5.51□□□□□ -1.53
CKAP4-203ENST00000553039 TM9SF3Q9HD45 589 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 ABCB6Q9NP58 842 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 GEMIN8Q9NWZ8 242 aaKnown RBP5.51□□□□□ -1.53
CKAP4-203ENST00000553039 WDR35Q9P2L0 1181 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 TAF6LQ9Y6J9 622 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 SPTBN1Q01082 2364 aaKnown RBP5.51□□□□□ -1.53
CKAP4-203ENST00000553039 PCDH15Q96QU1 1955 aa5.51□□□□□ -1.53
CKAP4-203ENST00000553039 MGAQ8IWI9 3026 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 KLF18A0A0U1RQI7 1052 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 C2orf78A6NCI8 922 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CCDC169A6NNP5 214 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CYB561D2O14569 222 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 PPP1R12AO14974 1030 aaPredicted RBP5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CLDN3O15551 220 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 TIMM44O43615 452 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 IGLV3-19P01714 112 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CLTAP09496 248 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 GARTP22102 1010 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 ACP1P24666 158 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CHMLP26374 656 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 EXOSC10Q01780 885 aaKnown RBP5.5□□□□□ -1.53
CKAP4-203ENST00000553039 STRN3Q13033 797 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 ZBTB6Q15916 424 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 IGFBP7Q16270 282 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 DDR2Q16832 855 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 ZSCAN23Q3MJ62 389 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 SLC45A4Q5BKX6 768 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 MPZL3Q6UWV2 235 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 KANSL1Q7Z3B3 1105 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 NEK8Q86SG6 692 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 GATAD2AQ86YP4 633 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CCDC83Q8IWF9 413 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 SFTPA1Q8IWL2 248 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 TRIM22Q8IYM9 498 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 OXR1Q8N573 874 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CEP120Q8N960 986 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 OR10T2Q8NGX3 314 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 HAS1Q92839 578 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 EXTL1Q92935 676 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 KCTD12Q96CX2 325 aaKnown RBP5.5□□□□□ -1.53
CKAP4-203ENST00000553039 TARS2Q9BW92 718 aaKnown RBP5.5□□□□□ -1.53
CKAP4-203ENST00000553039 GRIP2Q9C0E4 1043 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 ADNPQ9H2P0 1102 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 SPHK2Q9NRA0 654 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 PPP4R2Q9NY27 417 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 VPS54Q9P1Q0 977 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 TMEM63CQ9P1W3 806 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 ANAPC2Q9UJX6 822 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 SH3BP1Q9Y3L3 701 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 CACNA1DQ01668 2161 aa5.5□□□□□ -1.53
CKAP4-203ENST00000553039 A0A087WWV3 80 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 ARHGEF35A5YM69 484 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 WNT7AO00755 349 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SLC27A2O14975 620 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SGSM2O43147 1006 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 HOXC11O43248 304 aaPredicted RBP5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SLC37A4O43826 429 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 TSPAN3O60637 253 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 CDC45O75419 566 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 TOM1L1O75674 476 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 AGFG2O95081 481 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 CYP2F1P24903 491 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 TNFRSF8P28908 595 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 GGCXP38435 758 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 GRIK1P39086 918 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 CASRP41180 1078 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 MATR3P43243 847 aaKnown RBP eCLIP5.49□□□□□ -1.53
CKAP4-203ENST00000553039 DUSP3P51452 185 aaPredicted RBP5.49□□□□□ -1.53
CKAP4-203ENST00000553039 IL9RQ01113 521 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 PPP2R3AQ06190 1150 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 MESP2Q0VG99 397 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 MORC3Q14149 939 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 PRAMEF14Q5SWL7 426 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 FHL5Q5TD97 284 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SPATA1Q5VX52 437 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 TMEM214Q6NUQ4 689 aaKnown RBP5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SV2BQ7L1I2 683 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 C12orf40Q86WS4 652 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 MIB1Q86YT6 1006 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SPATA2LQ8IUW3 424 aaPredicted RBP5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SCN4BQ8IWT1 228 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 STKLD1Q8NE28 680 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 ZNF564Q8TBZ8 553 aaPredicted RBP5.49□□□□□ -1.53
CKAP4-203ENST00000553039 ACOX2Q99424 681 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 ACBD6Q9BR61 282 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 SLC26A6Q9BXS9 759 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 BTBD1Q9H0C5 482 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 IL25Q9H293 177 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 ERVMER34-1Q9H9K5 563 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 CD248Q9HCU0 757 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 TUFT1Q9NNX1 390 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 GDF3Q9NR23 364 aa5.49□□□□□ -1.53
CKAP4-203ENST00000553039 DNAJC17Q9NVM6 304 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms