RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 COPS2P61201 443 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 GNG11P61952 73 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 DEUP1Q05D60 604 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 DLX2Q07687 328 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 IFRD2Q12894 506 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 SEMA3BQ13214 749 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 DPYSL2Q16555 572 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 C5orf22Q49AR2 442 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 ATAT1Q5SQI0 421 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 ERMARDQ5T6L9 678 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 NUGGCQ68CJ6 796 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 HTR3DQ70Z44 454 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 PEX26Q7Z412 305 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 GRASPQ7Z6J2 395 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 UNC45BQ8IWX7 931 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 FAM217AQ8IXS0 508 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 KATNAL2Q8IYT4 538 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 CMTM8Q8IZV2 173 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 ADAMTS19Q8TE59 1207 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 PLD4Q96BZ4 506 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 NECTIN4Q96NY8 510 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 GCNAQ96QF7 691 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 WDR24Q96S15 920 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 CARD9Q9H257 536 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 ATXN3LQ9H3M9 355 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 IGFLR1Q9H665 355 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 WDCPQ9H6R7 721 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 CCSER2Q9H7U1 834 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 DDX56Q9NY93 547 aaKnown RBP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 GDE1Q9NZC3 331 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 MARCH2Q9P0N8 246 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 RCOR3Q9P2K3 495 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 SFMBT1Q9UHJ3 866 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 TTC7AQ9ULT0 858 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-211ENST00000552338 ARHGAP26Q9UNA1 814 aa9.96□□□□□ -0.82
LIMA1-211ENST00000552338 A0A1W2PRU2 124 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 C3orf70A6NLC5 250 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 I6L893 689 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 STC2O76061 302 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TBX18O95935 607 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 RARAP10276 462 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TCP1P17987 556 aaKnown RBP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 HOXC13P31276 330 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 CLCN6P51797 869 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 MLLT6P55198 1093 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TAS2R40P59535 323 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 ZXDBP98169 803 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 ATP11AP98196 1134 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 AMPD2Q01433 879 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TUBB2AQ13885 445 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 PDK2Q15119 407 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 ARL13BQ3SXY8 428 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 ARHGAP15Q53QZ3 475 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 C10orf120Q5SQS8 335 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 MANEALQ5VSG8 457 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TXNDC8Q6A555 127 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 CES5AQ6NT32 575 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TMC5Q6UXY8 1006 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 Q6ZNB5 142 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 SND1Q7KZF4 910 aaKnown RBP eCLIP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 RSRC2Q7L4I2 434 aaKnown RBP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 DDX42Q86XP3 938 aaKnown RBP eCLIP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 RASGEF1CQ8N431 466 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 C12orf76Q8N812 135 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 EXD1Q8NHP7 514 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TSC1Q92574 1164 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 FAF2Q96CS3 445 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TCEAL4Q96EI5 215 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 PBKQ96KB5 322 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 BTN2A3PQ96KV6 586 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 RIPOR3Q96MK2 946 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 PEBP4Q96S96 227 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 NAPGQ99747 312 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 TUBB2BQ9BVA1 445 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 DCLK3Q9C098 648 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 KIF9Q9HAQ2 790 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 DDIT4Q9NX09 232 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 RNF14Q9UBS8 474 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 USTQ9Y2C2 406 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 ZNF510Q9Y2H8 683 aa9.95□□□□□ -0.82
LIMA1-211ENST00000552338 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.95□□□□□ -0.82
LIMA1-211ENST00000552338 NUP205Q92621 2012 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 IGLV3-10A0A075B6K4 115 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 TRAV19A0A0A6YYK7 116 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 E2F8A0AVK6 867 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 FAM170AA1A519 330 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 CTAGE9A4FU28 777 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 SPOPO43791 374 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 PRPSAP2O60256 369 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 CSPG5O95196 566 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 FTCDO95954 541 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 MYL4P12829 197 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 TNNT1P13805 278 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 TCF4P15884 667 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 IGFBP4P22692 258 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 FSHRP23945 695 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 KDELR1P24390 212 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 L1CAMP32004 1257 aa9.94□□□□□ -0.82
LIMA1-211ENST00000552338 ATXN1P54253 815 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms