RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CACNA2D2Q9NY47 1150 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 FBXO10Q9UK96 956 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 RAD54BQ9Y620 910 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 A0A1W2PQF6 199 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 FGFR1OPO95684 399 aaKnown RBP17.07■□□□□ 0.32
VPS29-207ENST00000549970 CYBBP04839 570 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 KRT5P13647 590 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 HARS2P49590 506 aaKnown RBP17.07■□□□□ 0.32
VPS29-207ENST00000549970 ZNF132P52740 706 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 LIMK1P53667 647 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 MFAP3P55082 362 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 STILQ15468 1287 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 TRIP4Q15650 581 aaPredicted RBP17.07■□□□□ 0.32
VPS29-207ENST00000549970 PPM1JQ5JR12 505 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 STPG1Q5TH74 334 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 ARMCX6Q7L4S7 300 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 LPCAT2Q7L5N7 544 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 TMEFF1Q8IYR6 380 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 IPO4Q8TEX9 1081 aaKnown RBP17.07■□□□□ 0.32
VPS29-207ENST00000549970 DDI1Q8WTU0 396 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 KREMEN1Q96MU8 473 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 ABCC13Q9NSE7 274 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 CALCOCO1Q9P1Z2 691 aa17.07■□□□□ 0.32
VPS29-207ENST00000549970 MBD1Q9UIS9 605 aaPredicted RBP17.07■□□□□ 0.32
VPS29-207ENST00000549970 PLXND1Q9Y4D7 1925 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 ZBTB24O43167 697 aaPredicted RBP17.06■□□□□ 0.32
VPS29-207ENST00000549970 MSI1O43347 362 aaKnown RBP17.06■□□□□ 0.32
VPS29-207ENST00000549970 GABBR2O75899 941 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 BYSLQ13895 437 aaKnown RBP17.06■□□□□ 0.32
VPS29-207ENST00000549970 GEN1Q17RS7 908 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 RNF43Q68DV7 783 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 KIAA1211LQ6NV74 962 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 SCML4Q8N228 414 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 CPXM2Q8N436 756 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 CLEC4CQ8WTT0 213 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 PIGKQ92643 395 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 GABRG3Q99928 467 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 EDEM2Q9BV94 578 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 CHMP5Q9NZZ3 219 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 RWDD2AQ9UIY3 292 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 CLEC4EQ9ULY5 219 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 SLC27A6Q9Y2P4 619 aa17.06■□□□□ 0.32
VPS29-207ENST00000549970 HBS1LQ9Y450 684 aaKnown RBP17.06■□□□□ 0.32
VPS29-207ENST00000549970 GON4LQ3T8J9 2241 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 PATE3B3GLJ2 98 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 WASH3PC4AMC7 463 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 TSPAN3O60637 253 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 NDUFV2P19404 249 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 PTGER3P43115 390 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 ANKS1BQ7Z6G8 1248 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 FAM217AQ8IXS0 508 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 HSFY1Q96LI6 401 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 MIS12Q9H081 205 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 SLC6A17Q9H1V8 727 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 CD248Q9HCU0 757 aa17.05■□□□□ 0.32
VPS29-207ENST00000549970 UBE2TQ9NPD8 197 aaPredicted RBP17.05■□□□□ 0.32
VPS29-207ENST00000549970 LNP1A1A4G5 178 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 GFRA2O00451 464 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 KHNYNO15037 678 aaKnown RBP17.04■□□□□ 0.32
VPS29-207ENST00000549970 LTFP02788 710 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 MPPE1Q53F39 396 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 DEFB119Q8N690 84 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 UCMAQ8WVF2 138 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 IRGQQ8WZA9 623 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 DDX1Q92499 740 aaKnown RBP17.04■□□□□ 0.32
VPS29-207ENST00000549970 GOLGA1Q92805 767 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 PIWIL1Q96J94 861 aaKnown RBP17.04■□□□□ 0.32
VPS29-207ENST00000549970 CRACR2AQ9BSW2 395 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 ST7Q9NRC1 585 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 STON1Q9Y6Q2 735 aa17.04■□□□□ 0.32
VPS29-207ENST00000549970 CNOT1A5YKK6 2376 aaKnown RBP17.04■□□□□ 0.32
VPS29-207ENST00000549970 ATXN2Q99700 1313 aaKnown RBP17.03■□□□□ 0.32
VPS29-207ENST00000549970 FBXO21O94952 628 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 IL12RB1P42701 662 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 RPL6Q02878 288 aaKnown RBP17.03■□□□□ 0.32
VPS29-207ENST00000549970 LYSMD4Q5XG99 296 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 MSANTD2Q6P1R3 559 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 GJB7Q6PEY0 223 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 TRIM65Q6PJ69 517 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 KIAA1324Q6UXG2 1013 aaKnown RBP17.03■□□□□ 0.32
VPS29-207ENST00000549970 MED15Q96RN5 788 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 CIPCQ9C0C6 399 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 THAP10Q9P2Z0 257 aaPredicted RBP17.03■□□□□ 0.32
VPS29-207ENST00000549970 CYP8B1Q9UNU6 501 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 CNTN6Q9UQ52 1028 aa17.03■□□□□ 0.32
VPS29-207ENST00000549970 TNRC6BQ9UPQ9 1833 aaKnown RBP17.03■□□□□ 0.32
VPS29-207ENST00000549970 CEP192Q8TEP8 1941 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 IGHV1OR15-9A0A0B4J2B8 117 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 AP5Z1O43299 807 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 ZNF217O75362 1048 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 LETM1O95202 739 aaPredicted RBP17.02■□□□□ 0.32
VPS29-207ENST00000549970 NCAM1P13591 858 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 SLC9A1P19634 815 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 HOXD9P28356 352 aaPredicted RBP17.02■□□□□ 0.32
VPS29-207ENST00000549970 GPD2P43304 727 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 STARD3Q14849 445 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 DENND1BQ6P3S1 775 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 SLC36A4Q6YBV0 504 aa17.02■□□□□ 0.32
VPS29-207ENST00000549970 SORCS1Q8WY21 1168 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms