RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MON1BQ7L1V2 547 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 ZNF516Q92618 1163 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 LGMNQ99538 433 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 ADAM2Q99965 735 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 SLC24A3Q9HC58 644 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 XPNPEP3Q9NQH7 507 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 RUVBL2Q9Y230 463 aaKnown RBP16.75■□□□□ 0.27
CUX1-213ENST00000549414 HNRNPCL1O60812 293 aaKnown RBP16.75■□□□□ 0.27
CUX1-213ENST00000549414 CFHP08603 1231 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 RALBP11234 206 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 QPCTQ16769 361 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 LINC00523Q86TU6 105 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 NT5DC4Q86YG4 428 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 NDRG1Q92597 394 aaKnown RBP16.75■□□□□ 0.27
CUX1-213ENST00000549414 MTG1Q9BT17 334 aaPredicted RBP16.75■□□□□ 0.27
CUX1-213ENST00000549414 TKTL2Q9H0I9 626 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 RXFP1Q9HBX9 757 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 LATS2Q9NRM7 1088 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 ETNK2Q9NVF9 386 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 LTFP02788 710 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 GOT1P17174 413 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 TRIP10Q15642 601 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 ZBTB18Q99592 522 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 ELOVL4Q9GZR5 314 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 IRAK4Q9NWZ3 460 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 AURKCQ9UQB9 309 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 TRPM3Q9HCF6 1732 aaPredicted RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 DNAJC6O75061 913 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 KLHL2O95198 593 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 SERPINB5P36952 375 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 HARS2P49590 506 aaKnown RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 ACAP1Q15027 740 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 RCN1Q15293 331 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 KIRREL3Q8IZU9 778 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 ATXN2LQ8WWM7 1075 aaKnown RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 NIFKQ9BYG3 293 aaKnown RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 SLC30A1Q9Y6M5 507 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 CNTNAP1P78357 1384 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 CICQ96RK0 1608 aaPredicted RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 LRCH4O75427 683 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 SUPT7LO94864 414 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 ERVK-10P10266 1014 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 PSMB4P28070 264 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 SERPINB3P29508 390 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 KRT33BQ14525 404 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 ST13P4Q8IZP2 240 aaPredicted RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 PCSK9Q8NBP7 692 aaKnown RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 GMLQ99445 158 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 ADGRA2Q96PE1 1338 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 A0A1W2PPM1 405 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 SNX3O60493 162 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 CD48P09326 243 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 CPA3P15088 417 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 TMEM192Q8IY95 271 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 NUP93Q8N1F7 819 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 TRIML2Q8N7C3 387 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 B3GALNT2Q8NCR0 500 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 SHCBP1Q8NEM2 672 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 NTPCRQ9BSD7 190 aaKnown RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 ILKAPQ9H0C8 392 aaPredicted RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 DRG1Q9Y295 367 aaKnown RBP16.74■□□□□ 0.27
CUX1-213ENST00000549414 C2CD2Q9Y426 696 aa16.74■□□□□ 0.27
CUX1-213ENST00000549414 SUPT3HB4E1H0 165 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 TM9SF1O15321 606 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 SUPT3HO75486 399 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 FASTKD3Q14CZ7 662 aaKnown RBP16.73■□□□□ 0.27
CUX1-213ENST00000549414 CMTM5Q96DZ9 223 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 TSPAN17Q96FV3 270 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 NRDE2Q9H7Z3 1164 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 B4GALT4O60513 344 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 TSPAN3O60637 253 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 CHRM3P20309 590 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 GEMP55040 296 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 FSTL1Q12841 308 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 ZRANB3Q5FWF4 1079 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 PTAR1Q7Z6K3 402 aaPredicted RBP16.73■□□□□ 0.27
CUX1-213ENST00000549414 ZDHHC17Q8IUH5 632 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 ICA1LQ8NDH6 482 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 CALML6Q8TD86 181 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 CKAP2Q8WWK9 683 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 ZFP42Q96MM3 310 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 PRDM12Q9H4Q4 367 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 POPDC2Q9HBU9 364 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 NUDT2P50583 147 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 C6orf10Q5SRN2 563 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 CCNJLQ8IV13 435 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 POU5F2Q8N7G0 328 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 ATP6V0D2Q8N8Y2 350 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 APOPT1Q96IL0 206 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 EML4Q9HC35 981 aaKnown RBP16.73■□□□□ 0.27
CUX1-213ENST00000549414 DCDC2Q9UHG0 476 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 CDYLQ9Y232 598 aa16.73■□□□□ 0.27
CUX1-213ENST00000549414 AAR2Q9Y312 384 aaKnown RBP16.73■□□□□ 0.27
CUX1-213ENST00000549414 VAPBO95292 243 aa16.72■□□□□ 0.27
CUX1-213ENST00000549414 ITGAVP06756 1048 aa16.72■□□□□ 0.27
CUX1-213ENST00000549414 RAG1P15918 1043 aa16.72■□□□□ 0.27
CUX1-213ENST00000549414 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.72■□□□□ 0.27
CUX1-213ENST00000549414 SMARCD1Q96GM5 515 aa16.72■□□□□ 0.27
CUX1-213ENST00000549414 BTBD19C9JJ37 291 aa16.72■□□□□ 0.27
CUX1-213ENST00000549414 NPR3P17342 541 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms