RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ALADP13716 330 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 NQO1P15559 274 aaKnown RBP19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 ARL4AP40617 200 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 ETV4P43268 484 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 RABGGTBP53611 331 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 TAF1CQ15572 869 aaPredicted RBP19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 SNCBQ16143 134 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 MDH1BQ5I0G3 518 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 UNC5AQ6ZN44 842 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 BNIPLQ7Z465 357 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 LRRC6Q86X45 466 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 PTPRN2Q92932 1015 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 LRRC39Q96DD0 335 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 APOPT1Q96IL0 206 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 LGMNQ99538 433 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 VPS11Q9H270 941 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 ARHGEF4Q9NR80 690 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 COX16Q9P0S2 106 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 TRIM33Q9UPN9 1127 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 TRDMT1O14717 391 aaKnown RBP19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 MFSD11O43934 449 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 UGT1A9O60656 530 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 APOEP02649 317 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 DHRS4L1P0CG22 281 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 GNAT1P11488 350 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 NOS2P35228 1153 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 AFF1P51825 1210 aaKnown RBP19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 TTC39BQ5VTQ0 682 aaPredicted RBP19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 SYPL2Q5VXT5 272 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 HFE2Q6ZVN8 426 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 GSTCDQ8NEC7 633 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 TFB1MQ8WVM0 346 aaKnown RBP19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 HTR3CQ8WXA8 447 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 NPY6RQ99463 290 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 UGT1A7Q9HAW7 530 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 UGT1A10Q9HAW8 530 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 UGT1A8Q9HAW9 530 aa19.16■□□□□ 0.66
PRPF40B-208ENST00000548436 TRIM49D1C9J1S8 452 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 IGHA2P01877 340 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 RARBP10826 455 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 HUNKP57058 714 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 SLC8A3P57103 927 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 SEMA5AQ13591 1074 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 ANKRD20A2Q5SQ80 823 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 ANKRD20A1Q5TYW2 823 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 ANKRD20A3Q5VUR7 823 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 TRMT10BQ6PF06 316 aaKnown RBP19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 DENND5BQ6ZUT9 1274 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 ASRGL1Q7L266 308 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 KIF2BQ8N4N8 673 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 KCTD13Q8WZ19 329 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 KLHL29Q96CT2 875 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 FAM111AQ96PZ2 611 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 EBNA1BP2Q99848 306 aaKnown RBP19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 MANSC1Q9H8J5 431 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 RRAGCQ9HB90 399 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 CRTAC1Q9NQ79 661 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 RCOR3Q9P2K3 495 aaPredicted RBP19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 MAD1L1Q9Y6D9 718 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 F5H423 210 aaPredicted RBP19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 M0QYT0 321 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 CCNB1P14635 433 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 MAP3K7CLP57077 242 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 RNF139Q8WU17 664 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 ERP27Q96DN0 273 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 MED10Q9BTT4 135 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 TSPYL2Q9H2G4 693 aaPredicted RBP19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 LRRC4Q9HBW1 653 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 DDX43Q9NXZ2 648 aaKnown RBP19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 ZNF180Q9UJW8 692 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 CDY2AQ9Y6F7 541 aa19.15■□□□□ 0.66
PRPF40B-208ENST00000548436 NRP1O14786 923 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 CSH1P0DML2 217 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 CSH2P0DML3 217 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 MLH1P40692 756 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 RGS2P41220 211 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 NME3Q13232 169 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 PLEKHG4Q58EX7 1191 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 C17orf99Q6UX52 265 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 CDHR3Q6ZTQ4 885 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 PSTKQ8IV42 348 aaKnown RBP19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 RNF169Q8NCN4 708 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 SENP8Q96LD8 212 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 SLC2A13Q96QE2 648 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 LRRC37BQ96QE4 947 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 NPHS2Q9NP85 383 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 ARHGEF3Q9NR81 526 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 KRT82Q9NSB4 513 aa19.14■□□□□ 0.65
PRPF40B-208ENST00000548436 A0A0A0MRY4 1105 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 HACD1B0YJ81 288 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 CAPN15O75808 1086 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 UNC5CO95185 931 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 ATP6V1G2O95670 118 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 FYNP06241 537 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 SNRPAP09012 282 aaKnown RBP19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 GSTA2P09210 222 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 TKTL1P51854 596 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 MRPS6P82932 125 aaKnown RBP19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 SIX6OS1Q8N1H7 587 aa19.13■□□□□ 0.65
PRPF40B-208ENST00000548436 GSDMBQ8TAX9 411 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms