RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 MCRS1Q96EZ8 462 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 MMS19Q96T76 1030 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 MIS12Q9H081 205 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 SUDS3Q9H7L9 328 aaPredicted RBP8.86□□□□□ -0.99
VPS29-203ENST00000546588 NRDE2Q9H7Z3 1164 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 OSGEPQ9NPF4 335 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 MARCH5Q9NX47 278 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 RNF14Q9UBS8 474 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 TSPAN16Q9UKR8 245 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 TPX2Q9ULW0 747 aaKnown RBP8.86□□□□□ -0.99
VPS29-203ENST00000546588 SOX13Q9UN79 622 aa8.86□□□□□ -0.99
VPS29-203ENST00000546588 TMEM191CA6NGB0 347 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 A8MXQ7 604 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 MIF4GDA9UHW6 222 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 FAM229AH3BQW9 127 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 XPO1O14980 1071 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 TBC1D4O60343 1298 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 BUB1BO60566 1050 aaPredicted RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 CALCAP01258 141 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 RRM1P23921 792 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 LMO2P25791 158 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 CTNNA2P26232 953 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 HSD3B2P26439 372 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 PCSK1P29120 753 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 GNL1P36915 607 aaPredicted RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 ADH7P40394 386 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 SLC1A1P43005 524 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 HTRA4P83105 476 aaPredicted RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 CLCQ05315 142 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 DMTNQ08495 405 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 BST2Q10589 180 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 MAMLD1Q13495 774 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 ACAP1Q15027 740 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 WHAMMP3Q1A5X7 153 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 RAB41Q5JT25 222 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 ARTNQ5T4W7 220 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 WSCD1Q658N2 575 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 DENND1BQ6P3S1 775 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 C8orf86Q6ZUL3 223 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 PAQR9Q6ZVX9 377 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 MTERF4Q7Z6M4 381 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 XYLT1Q86Y38 959 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 ZNF280BQ86YH2 543 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 CMTR2Q8IYT2 770 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 FUKQ8N0W3 1084 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 RASGEF1CQ8N431 466 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 TMEM199Q8N511 208 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 MSANTD4Q8NCY6 345 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 C1orf131Q8NDD1 294 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 MYRIPQ8NFW9 859 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 MYCBPAPQ8TBZ2 947 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 ZNF564Q8TBZ8 553 aaPredicted RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 PMM1Q92871 262 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 ZNF653Q96CK0 615 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 RPGRIP1Q96KN7 1286 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 HSFY1Q96LI6 401 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 CEP295NLQ96MC4 621 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 NUP85Q9BW27 656 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 CARD9Q9H257 536 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 DPEP3Q9H4B8 488 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 CWH43Q9H720 699 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 CRTAC1Q9NQ79 661 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 PARVAQ9NVD7 372 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 ADAM22Q9P0K1 906 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 CNOT8Q9UFF9 292 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 ADAM28Q9UKQ2 775 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 ATP11BQ9Y2G3 1177 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 HYOU1Q9Y4L1 999 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 PCDHB7Q9Y5E2 793 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 PCDHB14Q9Y5E9 798 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 SAR1BQ9Y6B6 198 aa8.85□□□□□ -0.99
VPS29-203ENST00000546588 HELZP42694 1942 aaKnown RBP8.85□□□□□ -0.99
VPS29-203ENST00000546588 CASTOR2A6NHX0 329 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 SIGLEC16A6NMB1 481 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 M0QYV0 167 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 DDX3YO15523 660 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 TRAPPC3O43617 180 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 BUB1O43683 1085 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 B3GAT3O94766 335 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 ERBB2P04626 1255 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 ITGB1P05556 798 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 LINC00271P0C7V0 271 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 ESRRAP11474 423 aaPredicted RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 ABCB4P21439 1286 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 IGFBP6P24592 240 aaPredicted RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 TKTP29401 623 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 CTNNA1P35221 906 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 ACADSBP45954 432 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 GIPRP48546 466 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 CCL23P55773 120 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 WDR5P61964 334 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 TUBB4BP68371 445 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 ZNF252P-AS1Q0IIN9 211 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 SMARCB1Q12824 385 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 IFRD2Q12894 506 aaPredicted RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 ELAVL2Q12926 359 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 MAPRE1Q15691 268 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 CFAP221Q4G0U5 840 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 LIN9Q5TKA1 542 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 LRRC38Q5VT99 294 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms