RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SDCBP2Q9H190 292 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 PCED1AQ9H1Q7 454 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 C6orf106Q9H6K1 298 aaPredicted RBP13.42□□□□□ -0.26
SCAF11-208ENST00000546534 CSNK1G1Q9HCP0 422 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 TM9SF3Q9HD45 589 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 SRPRBQ9Y5M8 271 aaKnown RBP13.42□□□□□ -0.26
SCAF11-208ENST00000546534 RAI2Q9Y5P3 530 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 BPTFQ12830 3046 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 H0Y8X5 98 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 CLIC2O15247 247 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 CYP26A1O43174 497 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 TGFB1I1O43294 461 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 PCDHGA12O60330 932 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 PHACTR2O75167 634 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 STC2O76061 302 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 KLKB1P03952 638 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 PRKCHP24723 683 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 ACSL1P33121 698 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 STAT6P42226 847 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 PLA2G4AP47712 749 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 ORC1Q13415 861 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 TEAD4Q15561 434 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 FYB2Q5VWT5 728 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 LAYNQ6UX15 382 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 SCARA5Q6ZMJ2 495 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 CCDC73Q6ZRK6 1079 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 TMPRSS12Q86WS5 348 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 SLC2A14Q8TDB8 520 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 IGSF8Q969P0 613 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 PIWIL1Q96J94 861 aaKnown RBP13.41□□□□□ -0.26
SCAF11-208ENST00000546534 KCNK17Q96T54 332 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 KRTAP3-3Q9BYR6 98 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 KRTAP3-2Q9BYR7 98 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 NMUR1Q9HB89 426 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 AGPAT3Q9NRZ7 376 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.41□□□□□ -0.26
SCAF11-208ENST00000546534 ELOVL2Q9NXB9 296 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 SMC3Q9UQE7 1217 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 SCML2Q9UQR0 700 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.41□□□□□ -0.26
SCAF11-208ENST00000546534 KNL1Q8NG31 2342 aa13.41□□□□□ -0.26
SCAF11-208ENST00000546534 A0A1W2PQH9 124 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 HHLA1C9JL84 531 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 TLX3O43711 291 aaPredicted RBP13.4□□□□□ -0.26
SCAF11-208ENST00000546534 EPHX1P07099 455 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 RARGP13631 454 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 EIF2S3P41091 472 aaKnown RBP13.4□□□□□ -0.26
SCAF11-208ENST00000546534 GRIA4P48058 902 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 CCT8P50990 548 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 CLDN6P56747 220 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 IL9RQ01113 521 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 ZNF699Q32M78 642 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 ZNF667Q5HYK9 610 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 KCNT1Q5JUK3 1230 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 C10orf120Q5SQS8 335 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 KLHDC10Q6PID8 442 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 ZNF605Q86T29 641 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 SPNS2Q8IVW8 549 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 ZNF843Q8N446 348 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 XXYLT1Q8NBI6 393 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 RBBP8NLQ8NC74 664 aaPredicted RBP13.4□□□□□ -0.26
SCAF11-208ENST00000546534 ENGASEQ8NFI3 743 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 SORCS1Q8WY21 1168 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 VRTNQ9H8Y1 702 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 OSGEPQ9NPF4 335 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 FAM49BQ9NUQ9 324 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 FTSJ1Q9UET6 329 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 HMGXB4Q9UGU5 601 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 DNMT3LQ9UJW3 386 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 CLEC4EQ9ULY5 219 aa13.4□□□□□ -0.26
SCAF11-208ENST00000546534 CABIN1Q9Y6J0 2220 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 CYSRT1A8MQ03 144 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 EIF3DO15371 548 aaKnown RBP eCLIP13.39□□□□□ -0.27
SCAF11-208ENST00000546534 CLSTN1O94985 981 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 CD2BP2O95400 341 aaKnown RBP13.39□□□□□ -0.27
SCAF11-208ENST00000546534 JUPP14923 745 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 CASP4P49662 377 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 SEMG2Q02383 582 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 TMEM215Q68D42 235 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 SERPINA13PQ6UXR4 307 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 LRRC69Q6ZNQ3 347 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 EPM2AIP1Q7L775 607 aaPredicted RBP13.39□□□□□ -0.27
SCAF11-208ENST00000546534 ANKS1BQ7Z6G8 1248 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 CRYBG2Q8N1P7 616 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 PDILTQ8N807 584 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 C12orf29Q8N999 325 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 LSM14AQ8ND56 463 aaKnown RBP13.39□□□□□ -0.27
SCAF11-208ENST00000546534 ZNF507Q8TCN5 953 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 PLEKHO2Q8TD55 490 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 JAKMIP2Q96AA8 810 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 BIRC7Q96CA5 298 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 NXPE2Q96DL1 559 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 CIPCQ9C0C6 399 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 LHX5Q9H2C1 402 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 SHROOM3Q8TF72 1996 aa13.39□□□□□ -0.27
SCAF11-208ENST00000546534 ZNF462Q96JM2 2506 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 ADORA2BP29275 332 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 CHKAP35790 457 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 CTSKP43235 329 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 NDST1P52848 882 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms