RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 MPPE1Q53F39 396 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 HSP90AA4PQ58FG1 418 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 C10orf76Q5T2E6 689 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 ADGRF1Q5T601 910 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 HEATR6Q6AI08 1181 aaKnown RBP12.32□□□□□ -0.44
HDAC4-216ENST00000544989 SDE2Q6IQ49 451 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 DENND1BQ6P3S1 775 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 PKN3Q6P5Z2 889 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 GJB7Q6PEY0 223 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 CEP68Q76N32 757 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 FAM71AQ8IYT1 594 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 NAT16Q8N8M0 369 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 MSANTD4Q8NCY6 345 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 IPO4Q8TEX9 1081 aaKnown RBP12.32□□□□□ -0.44
HDAC4-216ENST00000544989 UCMAQ8WVF2 138 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 GAB3Q8WWW8 586 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 EDEM1Q92611 657 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 EZH1Q92800 747 aaPredicted RBP12.32□□□□□ -0.44
HDAC4-216ENST00000544989 LOXL4Q96JB6 756 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 STK33Q9BYT3 514 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 POPDC2Q9HBU9 364 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 ASNSD1Q9NWL6 643 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 STOML2Q9UJZ1 356 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 FBXO10Q9UK96 956 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 SLC27A6Q9Y2P4 619 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 BAHCC1Q9P281 2608 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 TYW5A2RUC4 315 aaKnown RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 FOXN3O00409 490 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 GFRA2O00451 464 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 TIMM44O43615 452 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 RPP40O75818 363 aaKnown RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 KLF8O95600 359 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 RETP07949 1114 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 TIE1P35590 1138 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 KIR2DL1P43626 348 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 YWHAZP63104 245 aaKnown RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 DRAP1Q14919 205 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 KRT31Q15323 416 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 CRY1Q16526 586 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 USP39Q53GS9 565 aaKnown RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 EFHC1Q5JVL4 640 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 MPP7Q5T2T1 576 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 FYB2Q5VWT5 728 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 PRR23BQ6ZRT6 265 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 TOGARAM2Q6ZUX3 1019 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 CACNA2D4Q7Z3S7 1137 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 ZDHHC17Q8IUH5 632 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 SCUBE3Q8IX30 993 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 ZNF513Q8N8E2 541 aaPredicted RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 IL17RCQ8NAC3 791 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 TXNDC5Q8NBS9 432 aaKnown RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 DDI1Q8WTU0 396 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 NDRG1Q92597 394 aaKnown RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 PPP1R13BQ96KQ4 1090 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 LSM14BQ9BX40 385 aaKnown RBP12.31□□□□□ -0.44
HDAC4-216ENST00000544989 PDCL3Q9H2J4 239 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 SYNCQ9H7C4 482 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 C2orf42Q9NWW7 574 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 TAB2Q9NYJ8 693 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 SFMBT1Q9UHJ3 866 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 TLR6Q9Y2C9 796 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 MYOFQ9NZM1 2061 aa12.31□□□□□ -0.44
HDAC4-216ENST00000544989 GPR179Q6PRD1 2367 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 LRRC10BA6NIK2 292 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 SMTNL1A8MU46 457 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 E5RJQ4 531 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 HRO43593 1189 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 HSF2BPO75031 334 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 GABBR2O75899 941 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 LSM8O95777 96 aaKnown RBP12.3□□□□□ -0.44
HDAC4-216ENST00000544989 CALCAP01258 141 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 IGLV3-27P01718 113 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 SLC2A3P11169 496 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 NTSR1P30989 418 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 GBP1P32455 592 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 CLCN1P35523 988 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 TBX4P57082 545 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 APBA1Q02410 837 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 TYRO3Q06418 890 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 KCNMA1Q12791 1236 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 EIF4HQ15056 248 aaKnown RBP12.3□□□□□ -0.44
HDAC4-216ENST00000544989 C11orf57Q6ZUT1 292 aaPredicted RBP12.3□□□□□ -0.44
HDAC4-216ENST00000544989 ANKS1BQ7Z6G8 1248 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 RASSF3Q86WH2 238 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 ZNF677Q86XU0 584 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 ALLCQ8N6M5 410 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 TMEM35BQ8NCS4 154 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 C1orf131Q8NDD1 294 aaKnown RBP12.3□□□□□ -0.44
HDAC4-216ENST00000544989 TMA16Q96EY4 203 aaKnown RBP12.3□□□□□ -0.44
HDAC4-216ENST00000544989 HHIPQ96QV1 700 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 BPIFA3Q9BQP9 254 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 NAA15Q9BXJ9 866 aaKnown RBP12.3□□□□□ -0.44
HDAC4-216ENST00000544989 VPS16Q9H269 839 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 FANCLQ9NW38 375 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 RRN3Q9NYV6 651 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 LIMA1Q9UHB6 759 aaKnown RBP12.3□□□□□ -0.44
HDAC4-216ENST00000544989 SLC12A6Q9UHW9 1150 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 FHOD1Q9Y613 1164 aa12.3□□□□□ -0.44
HDAC4-216ENST00000544989 ATG2BQ96BY7 2078 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms