RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FAM35AQ86V20 835 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 VPS52Q8N1B4 723 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 SLC7A14Q8TBB6 771 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 DHRS4Q9BTZ2 278 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 C12orf65Q9H3J6 166 aaKnown RBP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 SENP1Q9P0U3 644 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 INPP5FQ9Y2H2 1132 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 MFSD11O43934 449 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 FSBPO95073 299 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 FYNP06241 537 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 ELNP15502 786 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 LHX1P48742 406 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 NR2C2P49116 596 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 DEUP1Q05D60 604 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 ACTN3Q08043 901 aaPredicted RBP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 MGAT3Q09327 533 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 ITIH4Q14624 930 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 FBXW10Q5XX13 1052 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 PACS2Q86VP3 889 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 ZMIZ2Q8NF64 920 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 QKIQ96PU8 341 aaKnown RBP eCLIP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 CEP41Q9BYV8 373 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 UPF3AQ9H1J1 476 aaKnown RBP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 POPDC2Q9HBU9 364 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 ZC3H7BQ9UGR2 993 aaKnown RBP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 STAP1Q9ULZ2 295 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 USP15Q9Y4E8 981 aaPredicted RBP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 TYROBPO43914 113 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 ADAMTS4O75173 837 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 B3GAT3O94766 335 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 VAV1P15498 845 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 GRIA1P42261 906 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 DNAJC3Q13217 504 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 XRCC4Q13426 336 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 RASA2Q15283 850 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 UPP1Q16831 310 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 DENND5BQ6ZUT9 1274 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 RNF139Q8WU17 664 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 TFB1MQ8WVM0 346 aaKnown RBP16.89■□□□□ 0.29
COL4A1-204ENST00000543140 NT5C3BQ969T7 300 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 THOC1Q96FV9 657 aaKnown RBP16.89■□□□□ 0.29
COL4A1-204ENST00000543140 SMG5Q9UPR3 1016 aaKnown RBP16.89■□□□□ 0.29
COL4A1-204ENST00000543140 GIT1Q9Y2X7 761 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 IKBKGQ9Y6K9 419 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 GCATO75600 419 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 FAM155BO75949 473 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 BRCC3P46736 316 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 SPARCL1Q14515 664 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 TMEM86AQ8N2M4 240 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 MZB1Q8WU39 189 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 ABCF3Q9NUQ8 709 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 FETUBQ9UGM5 382 aa16.89■□□□□ 0.29
COL4A1-204ENST00000543140 HGSO14964 777 aaPredicted RBP16.88■□□□□ 0.29
COL4A1-204ENST00000543140 OAS1P00973 400 aaKnown RBP16.88■□□□□ 0.29
COL4A1-204ENST00000543140 AMHP03971 560 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 NCAM1P13591 858 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 GBP2P32456 591 aaPredicted RBP16.88■□□□□ 0.29
COL4A1-204ENST00000543140 AP1B1Q10567 949 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 PTK7Q13308 1070 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 CGB2Q6NT52 195 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 SPATA21Q7Z572 469 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 CTAGE3PQ8IX95 158 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 TP53INP2Q8IXH6 220 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 HTR3CQ8WXA8 447 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 EDEM1Q92611 657 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 SLC2A13Q96QE2 648 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 ANLNQ9NQW6 1124 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 TRMT13Q9NUP7 481 aaKnown RBP16.88■□□□□ 0.29
COL4A1-204ENST00000543140 MAD1L1Q9Y6D9 718 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 TSC2P49815 1807 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 TDRD15B5MCY1 1934 aaKnown RBP16.88■□□□□ 0.29
COL4A1-204ENST00000543140 FAM72CH0Y354 149 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 DAOAP59103 153 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 TTC31Q49AM3 519 aaPredicted RBP16.88■□□□□ 0.29
COL4A1-204ENST00000543140 FAM72AQ5TYM5 149 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 HHATQ5VTY9 493 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 FAM72DQ6L9T8 149 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 LVRNQ6Q4G3 990 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 TRPM8Q7Z2W7 1104 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 FAM72BQ86X60 149 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 MPP5Q8N3R9 675 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 CCNYQ8ND76 341 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 ADAM2Q99965 735 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 PITPNM3Q9BZ71 974 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 KDM4CQ9H3R0 1056 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 SLCO1B3Q9NPD5 702 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 SEPT10Q9P0V9 454 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 TLL2Q9Y6L7 1015 aa16.88■□□□□ 0.29
COL4A1-204ENST00000543140 DGKIO75912 1065 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 INHBAP08476 426 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 SCTRP47872 440 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 TM4SF4P48230 202 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 FAAP100Q0VG06 881 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 FAM133BQ5BKY9 247 aaKnown RBP16.87■□□□□ 0.29
COL4A1-204ENST00000543140 PPM1NQ8N819 430 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 OLFM3Q96PB7 478 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 RTP3Q9BQQ7 232 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 PIH1D1Q9NWS0 290 aaKnown RBP16.87■□□□□ 0.29
COL4A1-204ENST00000543140 WDR91A4D1P6 747 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 CXorf49A8MYA2 514 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms