RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 GRIA4P48058 902 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 PSMC1P62191 440 aaKnown RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 DAB2P98082 770 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ARID5AQ03989 594 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ST3GAL1Q11201 340 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 TAF10Q12962 218 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 SERINC3Q13530 473 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF174Q15697 407 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 LINC00303Q3SY05 128 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 C3orf38Q5JPI3 329 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 INO80CQ6PI98 192 aaPredicted RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ZPBP2Q6X784 338 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 USP53Q70EK8 1073 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 HS2ST1Q7LGA3 356 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 TMC6Q7Z403 805 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 OSTM1Q86WC4 334 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 CCDC116Q8IYX3 515 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 LSMEM2Q8N112 164 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 PDCL2Q8N4E4 241 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 NSUN7Q8NE18 718 aaKnown RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 GANCQ8TET4 914 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 NOC3LQ8WTT2 800 aaKnown RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 GTF3C6Q969F1 213 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 SKA1Q96BD8 255 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 OTUB2Q96DC9 234 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 HIC2Q96JB3 615 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 MMS19Q96T76 1030 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ELF4Q99607 663 aaPredicted RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 MSTO1Q9BUK6 570 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 RUSC1Q9BVN2 902 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ABCB6Q9NP58 842 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 HSPBP1Q9NZL4 362 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 VTI1BQ9UEU0 232 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 LRWD1Q9UFC0 647 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ADAMTS1Q9UHI8 967 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 L1RE1Q9UN81 338 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 AGAP1Q9UPQ3 857 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 DNM3Q9UQ16 869 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 SNX14Q9Y5W7 946 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 CABIN1Q9Y6J0 2220 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 TEX15Q9BXT5 2789 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 CKAP5Q14008 2032 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 SPTA1P02549 2419 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 NUMA1Q14980 2115 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 NBPF19A0A087WUL8 3843 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 NPHP3-ACAD11A0A0J9YXS1 232 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 RNF223E7ERA6 249 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 HNRNPDLO14979 420 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 COCHO43405 550 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SDC3O75056 442 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 CDKL5O76039 1030 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SEMA4FO95754 770 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 OAS1P00973 400 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 ITGB3P05106 788 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 MAPTP10636 758 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PFKLP17858 780 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PLCG1P19174 1290 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 CD27P26842 260 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PSMA5P28066 241 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 POLR2BP30876 1174 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 EIF1AXP47813 144 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PPP3CCP48454 512 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 COPAP53621 1224 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 BCAT1P54687 386 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 ERVPABLB-1P60509 514 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PSMA6P60900 246 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SKOR1P84550 965 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 TFAMQ00059 246 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 E2F1Q01094 437 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 ORC1Q13415 861 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 TOB2Q14106 344 aaPredicted RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SHBQ15464 509 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 KYAT1Q16773 422 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SKIDA1Q1XH10 827 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 HAUS3Q68CZ6 603 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 RINT1Q6NUQ1 792 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 C4orf50Q6ZRC1 276 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 CD302Q8IX05 232 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF366Q8N895 744 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 DCBLD1Q8N8Z6 715 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 TMEM161BQ8NDZ6 487 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SAP25Q8TEE9 199 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SNX29Q8TEQ0 813 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 LEO1Q8WVC0 666 aaPredicted RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 UCMAQ8WVF2 138 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 FBXO32Q969P5 355 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 MYLPFQ96A32 169 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF274Q96GC6 653 aaPredicted RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 LIN37Q96GY3 246 aaPredicted RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SPATA17Q96L03 361 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF560Q96MR9 790 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SLC6A18Q96N87 628 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SLITRK1Q96PX8 696 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 TSPAN18Q96SJ8 248 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PLIN2Q99541 437 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 RBCK1Q9BYM8 510 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 CIPCQ9C0C6 399 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 BTBD1Q9H0C5 482 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms