RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TMEM110Q86TL2 294 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 LONP2Q86WA8 852 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 VPS52Q8N1B4 723 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 C10orf82Q8WW14 230 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 WNT8BQ93098 351 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 KLC2Q9H0B6 622 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 ARL8BQ9NVJ2 186 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 MYBPHLA2RUH7 354 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 I6L893 689 aaPredicted RBP17.49■□□□□ 0.39
USP28-208ENST00000540438 CAPN9O14815 690 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 PRPF4O43172 522 aaKnown RBP eCLIP17.49■□□□□ 0.39
USP28-208ENST00000540438 KCNA4P22459 653 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 KLHL38Q2WGJ6 581 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 USP50Q70EL3 339 aaPredicted RBP17.49■□□□□ 0.39
USP28-208ENST00000540438 FBXO27Q8NI29 283 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 MIOSQ9NXC5 875 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 PCDH10Q9P2E7 1040 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 SMG5Q9UPR3 1016 aaKnown RBP17.49■□□□□ 0.39
USP28-208ENST00000540438 POMCP01189 267 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 TMPRSS15P98073 1019 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 FAM219BQ5XKK7 198 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 ARID3BQ8IVW6 561 aaPredicted RBP17.48■□□□□ 0.39
USP28-208ENST00000540438 ZNF276Q8N554 614 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 UPF1Q92900 1129 aaKnown RBP eCLIP17.48■□□□□ 0.39
USP28-208ENST00000540438 SIK2Q9H0K1 926 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 PIGVQ9NUD9 493 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 YJEFN3A6XGL0 299 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 E7ENQ6 273 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 ENDOD1O94919 500 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 ANP32DO95626 131 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 MYL2P10916 166 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 GM2AP17900 193 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 CHI3L2Q15782 390 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 NCBP2-AS2Q69YL0 99 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 ZNF534Q76KX8 674 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 COLGALT1Q8NBJ5 622 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 SHKBP1Q8TBC3 707 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 SLC44A1Q8WWI5 657 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 TMEM120AQ9BXJ8 343 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 NFKBIZQ9BYH8 718 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 PAK5Q9P286 719 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 USH1CQ9Y6N9 552 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 UNC80Q8N2C7 3258 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 CDH23Q9H251 3354 aa17.48■□□□□ 0.39
USP28-208ENST00000540438 UNC5CO95185 931 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 SRGAP2BP0DMP2 458 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 BST2Q10589 180 aaKnown RBP17.47■□□□□ 0.39
USP28-208ENST00000540438 B3GALNT2Q8NCR0 500 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 C3orf58Q8NDZ4 430 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 KCNN1Q92952 543 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 PGBD4Q96DM1 585 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 NCAPGQ9BPX3 1015 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 PRDM12Q9H4Q4 367 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 LRRC4Q9HBW1 653 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 KRT82Q9NSB4 513 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 SBF1O95248 1867 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 HMX2A2RU54 273 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 ATP9BO43861 1147 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 SERPINB4P48594 390 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 CLCNKBP51801 687 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 TKTL1P51854 596 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 CACNB2Q08289 660 aaPredicted RBP17.47■□□□□ 0.39
USP28-208ENST00000540438 TRIM68Q6AZZ1 485 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 PID1Q7Z2X4 250 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 CMC1Q7Z7K0 106 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 RIBC1Q8N443 379 aaPredicted RBP17.47■□□□□ 0.39
USP28-208ENST00000540438 FAM167BQ9BTA0 163 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 TBC1D10AQ9BXI6 508 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 ULBP1Q9BZM6 244 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.47■□□□□ 0.39
USP28-208ENST00000540438 IQANK1A0A1B0GTG1 560 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 E7ESA3 106 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 RPL10AP62906 217 aaKnown RBP17.47■□□□□ 0.39
USP28-208ENST00000540438 MRPS5P82675 430 aaKnown RBP17.47■□□□□ 0.39
USP28-208ENST00000540438 TDRPQ86YL5 185 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 ANKRD52Q8NB46 1076 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 SMG8Q8ND04 991 aaKnown RBP17.47■□□□□ 0.39
USP28-208ENST00000540438 NSMCE1Q8WV22 266 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 FOXP3Q9BZS1 431 aa17.47■□□□□ 0.39
USP28-208ENST00000540438 RNF103O00237 685 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 NCAM1P13591 858 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 KDSRQ06136 332 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 ZBTB6Q15916 424 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 ANKRD20A2Q5SQ80 823 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 ANKRD20A1Q5TYW2 823 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 ANKRD20A3Q5VUR7 823 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 EFCAB3Q8N7B9 438 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 DTX3LQ8TDB6 740 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 P2RY11Q96G91 374 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 VRTNQ9H8Y1 702 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 CAB39LQ9H9S4 337 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 G3BP2Q9UN86 482 aaKnown RBP17.46■□□□□ 0.39
USP28-208ENST00000540438 STARD13Q9Y3M8 1113 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 ACTL7BQ9Y614 415 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 PTGESO14684 152 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 BST1Q10588 318 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 DLG2Q15700 870 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 UBXN11Q5T124 520 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 SIX6OS1Q8N1H7 587 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 RRAGCQ9HB90 399 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms