RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 CNOT8Q9UFF9 292 aaKnown RBP13.55□□□□□ -0.24
CCDC42-202ENST00000539522 MUTYHQ9UIF7 546 aa13.55□□□□□ -0.24
CCDC42-202ENST00000539522 PPP2R2CQ9Y2T4 447 aa13.55□□□□□ -0.24
CCDC42-202ENST00000539522 WNT6Q9Y6F9 365 aa13.55□□□□□ -0.24
CCDC42-202ENST00000539522 MIA3Q5JRA6 1907 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 SLC12A8A0AV02 714 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 TMEM191CA6NGB0 347 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 TUBB4AP04350 444 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 HMBSP08397 361 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 IRF1P10914 325 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 KRT3P12035 628 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 ARSAP15289 507 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 PSMC3P17980 439 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 NOS2P35228 1153 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 EML3Q32P44 896 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 C10orf76Q5T2E6 689 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 DAB2IPQ5VWQ8 1189 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 NADSYN1Q6IA69 706 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 HTR3DQ70Z44 454 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 TXLNBQ8N3L3 684 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 CENPIQ92674 756 aaPredicted RBP13.54□□□□□ -0.24
CCDC42-202ENST00000539522 ZNF653Q96CK0 615 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 PGAP3Q96FM1 320 aaPredicted RBP13.54□□□□□ -0.24
CCDC42-202ENST00000539522 MCEEQ96PE7 176 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 KIF9Q9HAQ2 790 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 TRMT1Q9NXH9 659 aaKnown RBP13.54□□□□□ -0.24
CCDC42-202ENST00000539522 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.54□□□□□ -0.24
CCDC42-202ENST00000539522 WDR35Q9P2L0 1181 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 SALL4Q9UJQ4 1053 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 STRIP2Q9ULQ0 834 aa13.54□□□□□ -0.24
CCDC42-202ENST00000539522 ANKRD62A6NC57 917 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 KCNU1A8MYU2 1149 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 DPYSL4O14531 572 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 HDAC4P56524 1084 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 TDGQ13569 410 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 SLC25A52Q3SY17 297 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 NAIF1Q69YI7 327 aaPredicted RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 DNAJC24Q6P3W2 148 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 CYP4V2Q6ZWL3 525 aaPredicted RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 RSRC2Q7L4I2 434 aaKnown RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 REXO1L1PQ8IX06 675 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 FAM217AQ8IXS0 508 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 C17orf53Q8N3J3 647 aaPredicted RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 ACRBPQ8NEB7 543 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 RNF139Q8WU17 664 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 NXPE3Q969Y0 559 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 BTBD6Q96KE9 485 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 CDK5RAP1Q96SZ6 601 aaKnown RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 OSGEPQ9NPF4 335 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 LUC7LQ9NQ29 371 aaKnown RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 OLA1Q9NTK5 396 aaKnown RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 MYO1AQ9UBC5 1043 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 AGO1Q9UL18 857 aaKnown RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 DUSP12Q9UNI6 340 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 TLR6Q9Y2C9 796 aa13.53□□□□□ -0.24
CCDC42-202ENST00000539522 HBS1LQ9Y450 684 aaKnown RBP13.53□□□□□ -0.24
CCDC42-202ENST00000539522 TTC28Q96AY4 2481 aa13.52□□□□□ -0.24
CCDC42-202ENST00000539522 GOLGA6L7A0A1B0GV03 622 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 E2F8A0AVK6 867 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 M0QYT0 321 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 CHADO15335 359 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 TMEM253P0C7T8 217 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 TCF4P15884 667 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 PDGFRAP16234 1089 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 CORO1AP31146 461 aaKnown RBP13.52□□□□□ -0.25
CCDC42-202ENST00000539522 GDI1P31150 447 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SLC6A4P31645 630 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 MAGEA1P43355 309 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 PTPN9P43378 593 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 CXCR3P49682 368 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SULT1E1P49888 294 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SGSHP51688 502 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SNX16P57768 344 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 RING1Q06587 406 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 NNTQ13423 1086 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 FAM133BQ5BKY9 247 aaKnown RBP13.52□□□□□ -0.25
CCDC42-202ENST00000539522 ZC3H12AQ5D1E8 599 aaKnown RBP13.52□□□□□ -0.25
CCDC42-202ENST00000539522 PPP1R2P3Q6NXS1 205 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 ZNF662Q6ZS27 426 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 ADGRG2Q8IZP9 1017 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 MSANTD4Q8NCY6 345 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 DEPDC1BQ8WUY9 529 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 OSCP1Q8WVF1 389 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 DESI2Q9BSY9 194 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SELENOOQ9BVL4 669 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 COL25A1Q9BXS0 654 aaPredicted RBP13.52□□□□□ -0.25
CCDC42-202ENST00000539522 LACRTQ9GZZ8 138 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 EBF3Q9H4W6 596 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SLC2A4RGQ9NR83 387 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 PARVAQ9NVD7 372 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 GTSE1Q9NYZ3 720 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 STOML2Q9UJZ1 356 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SORCS3Q9UPU3 1222 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 PCDHA13Q9Y5I0 950 aa13.52□□□□□ -0.25
CCDC42-202ENST00000539522 SYNJ2BP-COX16A0A087WUM0 186 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 CAPN9O14815 690 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 H2AFZP0C0S5 128 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 MYBL1P10243 752 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 SRFP11831 508 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 GPD1P21695 349 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms