RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PPP1R26Q5T8A7 1209 aaPredicted RBP14.25□□□□□ -0.13
SS18-204ENST00000539244 FOXD4L5Q5VV16 416 aaPredicted RBP14.25□□□□□ -0.13
SS18-204ENST00000539244 FOXD4L3Q6VB84 417 aaPredicted RBP14.25□□□□□ -0.13
SS18-204ENST00000539244 GLRX5Q86SX6 157 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 PROSER1Q86XN7 944 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 NAXDQ8IW45 347 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 FAM217AQ8IXS0 508 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 CPXM2Q8N436 756 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 UCMAQ8WVF2 138 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 FOXD4L4Q8WXT5 416 aaPredicted RBP14.25□□□□□ -0.13
SS18-204ENST00000539244 ERLEC1Q96DZ1 483 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 TOE1Q96GM8 510 aaKnown RBP14.25□□□□□ -0.13
SS18-204ENST00000539244 CAMK1GQ96NX5 476 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 UBXN6Q9BZV1 441 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 DNAI2Q9GZS0 605 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 LAMA5O15230 3695 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 PLXNB3Q9ULL4 1909 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 KCNJ18B7U540 433 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 KIF20AO95235 890 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 FTH1P19P0C7X4 201 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 NCAM1P13591 858 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 HOXB3P14651 431 aaPredicted RBP14.24□□□□□ -0.13
SS18-204ENST00000539244 NR2F2P24468 414 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 OXTRP30559 389 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 CORO1AP31146 461 aaKnown RBP14.24□□□□□ -0.13
SS18-204ENST00000539244 GCLMP48507 274 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 TPMTP51580 245 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 RAB41Q5JT25 222 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 LRSAM1Q6UWE0 723 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 ANKS1BQ7Z6G8 1248 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 TMPRSS6Q8IU80 811 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 ARHGAP18Q8N392 663 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 TTC39CQ8N584 583 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 GPR174Q9BXC1 333 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 SLC2A11Q9BYW1 496 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 TMEM8AQ9HCN3 771 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 RASAL2Q9UJF2 1139 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 AGO1Q9UL18 857 aaKnown RBP14.24□□□□□ -0.13
SS18-204ENST00000539244 HPSEQ9Y251 543 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 PCDHB9Q9Y5E1 797 aa14.24□□□□□ -0.13
SS18-204ENST00000539244 DSPP15924 2871 aaKnown RBP14.23□□□□□ -0.13
SS18-204ENST00000539244 METTL12A8MUP2 240 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 MEI4A8MW99 385 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 RHOBTB3O94955 611 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 TRIM49P0CI25 452 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 TRIM49CP0CI26 452 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 PFKFB1P16118 471 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 CD58P19256 250 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 CMA1P23946 247 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 GTF2H1P32780 548 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 COPAP53621 1224 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 DNM1Q05193 864 aaKnown RBP14.23□□□□□ -0.13
SS18-204ENST00000539244 EFEMP1Q12805 493 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 ZNF234Q14588 700 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 CCDC150Q8NCX0 1101 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 C1orf216Q8TAB5 229 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 SIPA1Q96FS4 1042 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 PCED1AQ9H1Q7 454 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 ELOVL2Q9NXB9 296 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 MARCH2Q9P0N8 246 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 PCOLCE2Q9UKZ9 415 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 LHX6Q9UPM6 363 aa14.23□□□□□ -0.13
SS18-204ENST00000539244 ANKRD11Q6UB99 2663 aaPredicted RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 PTPRBP23467 1997 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 A0A1B0GVL5 298 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 BCAT2O15382 392 aaPredicted RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 TIMM44O43615 452 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 SYNCRIPO60506 623 aaKnown RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 CER1O95813 267 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 CYBBP04839 570 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 KRT13P13646 458 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 PSMC2P35998 433 aaKnown RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 PDE4CQ08493 712 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 COL9A2Q14055 689 aaPredicted RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 DCAF12L1Q5VU92 463 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 TMEM215Q68D42 235 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 ARHGAP17Q68EM7 881 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 KRT39Q6A163 491 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 IL27RAQ6UWB1 636 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 CCNI2Q6ZMN8 369 aaPredicted RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 DBX2Q6ZNG2 339 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 PIGZQ86VD9 579 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 DENND1CQ8IV53 801 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 FAM186BQ8IYM0 893 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 GUF1Q8N442 669 aaKnown RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 ZCCHC9Q8N567 271 aaKnown RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 BAHD1Q8TBE0 780 aaPredicted RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 PRCCQ92733 491 aaPredicted RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 PLD4Q96BZ4 506 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 NUP58Q9BVL2 599 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 KIAA1522Q9P206 1035 aaPredicted RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 STRIP2Q9ULQ0 834 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 CLEC4EQ9ULY5 219 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 APOBEC2Q9Y235 224 aaKnown RBP14.22□□□□□ -0.13
SS18-204ENST00000539244 CABIN1Q9Y6J0 2220 aa14.22□□□□□ -0.13
SS18-204ENST00000539244 FAM237AA0A1B0GTK4 181 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 DKK1O94907 266 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 HMBSP08397 361 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 PRKCHP24723 683 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 RPL13P26373 211 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms